SILENT_MODE BLOCK_FILE jp_JuohJDq.concise.blc MAX_NSEQ 817 MAX_INPUT_LEN 819 OUTPUT_FILE jp_JuohJDq.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 182 806 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 807 182 816 H SPACE SUB_CHARS 1 807 182 816 E SPACE SUB_CHARS 1 807 182 816 - SPACE STRAND 8 810 9 COLOUR_TEXT_REGION 8 810 9 810 51 STRAND 14 810 18 COLOUR_TEXT_REGION 14 810 18 810 51 STRAND 23 810 27 COLOUR_TEXT_REGION 23 810 27 810 51 STRAND 55 810 59 COLOUR_TEXT_REGION 55 810 59 810 51 STRAND 80 810 84 COLOUR_TEXT_REGION 80 810 84 810 51 STRAND 88 810 93 COLOUR_TEXT_REGION 88 810 93 810 51 STRAND 169 810 170 COLOUR_TEXT_REGION 169 810 170 810 51 HELIX 4 810 7 COLOUR_TEXT_REGION 4 810 7 810 50 HELIX 29 810 43 COLOUR_TEXT_REGION 29 810 43 810 50 HELIX 62 810 77 COLOUR_TEXT_REGION 62 810 77 810 50 HELIX 103 810 115 COLOUR_TEXT_REGION 103 810 115 810 50 HELIX 122 810 134 COLOUR_TEXT_REGION 122 810 134 810 50 HELIX 142 810 155 COLOUR_TEXT_REGION 142 810 155 810 50 HELIX 173 810 180 COLOUR_TEXT_REGION 173 810 180 810 50 STRAND 14 815 18 COLOUR_TEXT_REGION 14 815 18 815 51 STRAND 22 815 27 COLOUR_TEXT_REGION 22 815 27 815 51 STRAND 56 815 58 COLOUR_TEXT_REGION 56 815 58 815 51 STRAND 80 815 84 COLOUR_TEXT_REGION 80 815 84 815 51 STRAND 88 815 93 COLOUR_TEXT_REGION 88 815 93 815 51 HELIX 3 815 10 COLOUR_TEXT_REGION 3 815 10 815 50 HELIX 29 815 43 COLOUR_TEXT_REGION 29 815 43 815 50 HELIX 62 815 77 COLOUR_TEXT_REGION 62 815 77 815 50 HELIX 103 815 115 COLOUR_TEXT_REGION 103 815 115 815 50 HELIX 122 815 133 COLOUR_TEXT_REGION 122 815 133 815 50 HELIX 142 815 154 COLOUR_TEXT_REGION 142 815 154 815 50 HELIX 170 815 170 COLOUR_TEXT_REGION 170 815 170 815 50 HELIX 173 815 180 COLOUR_TEXT_REGION 173 815 180 815 50 STRAND 5 816 9 COLOUR_TEXT_REGION 5 816 9 816 51 STRAND 14 816 18 COLOUR_TEXT_REGION 14 816 18 816 51 STRAND 23 816 27 COLOUR_TEXT_REGION 23 816 27 816 51 STRAND 50 816 59 COLOUR_TEXT_REGION 50 816 59 816 51 STRAND 80 816 84 COLOUR_TEXT_REGION 80 816 84 816 51 STRAND 88 816 93 COLOUR_TEXT_REGION 88 816 93 816 51 STRAND 168 816 172 COLOUR_TEXT_REGION 168 816 172 816 51 HELIX 28 816 43 COLOUR_TEXT_REGION 28 816 43 816 50 HELIX 62 816 77 COLOUR_TEXT_REGION 62 816 77 816 50 HELIX 103 816 115 COLOUR_TEXT_REGION 103 816 115 816 50 HELIX 122 816 135 COLOUR_TEXT_REGION 122 816 135 816 50 HELIX 142 816 157 COLOUR_TEXT_REGION 142 816 157 816 50 HELIX 173 816 180 COLOUR_TEXT_REGION 173 816 180 816 50