SILENT_MODE BLOCK_FILE jp_aUgRXhf.concise.blc MAX_NSEQ 951 MAX_INPUT_LEN 953 OUTPUT_FILE jp_aUgRXhf.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 165 940 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 941 165 950 H SPACE SUB_CHARS 1 941 165 950 E SPACE SUB_CHARS 1 941 165 950 - SPACE STRAND 6 944 6 COLOUR_TEXT_REGION 6 944 6 944 51 STRAND 46 944 47 COLOUR_TEXT_REGION 46 944 47 944 51 STRAND 54 944 61 COLOUR_TEXT_REGION 54 944 61 944 51 STRAND 70 944 72 COLOUR_TEXT_REGION 70 944 72 944 51 STRAND 76 944 79 COLOUR_TEXT_REGION 76 944 79 944 51 STRAND 84 944 86 COLOUR_TEXT_REGION 84 944 86 944 51 STRAND 98 944 102 COLOUR_TEXT_REGION 98 944 102 944 51 STRAND 105 944 111 COLOUR_TEXT_REGION 105 944 111 944 51 STRAND 117 944 121 COLOUR_TEXT_REGION 117 944 121 944 51 STRAND 140 944 144 COLOUR_TEXT_REGION 140 944 144 944 51 HELIX 25 944 40 COLOUR_TEXT_REGION 25 944 40 944 50 HELIX 87 944 87 COLOUR_TEXT_REGION 87 944 87 944 50 HELIX 126 944 134 COLOUR_TEXT_REGION 126 944 134 944 50 HELIX 150 944 162 COLOUR_TEXT_REGION 150 944 162 944 50 STRAND 6 949 7 COLOUR_TEXT_REGION 6 949 7 949 51 STRAND 55 949 61 COLOUR_TEXT_REGION 55 949 61 949 51 STRAND 70 949 72 COLOUR_TEXT_REGION 70 949 72 949 51 STRAND 76 949 79 COLOUR_TEXT_REGION 76 949 79 949 51 STRAND 84 949 87 COLOUR_TEXT_REGION 84 949 87 949 51 STRAND 97 949 102 COLOUR_TEXT_REGION 97 949 102 949 51 STRAND 105 949 111 COLOUR_TEXT_REGION 105 949 111 949 51 STRAND 117 949 122 COLOUR_TEXT_REGION 117 949 122 949 51 STRAND 140 949 144 COLOUR_TEXT_REGION 140 949 144 949 51 HELIX 25 949 40 COLOUR_TEXT_REGION 25 949 40 949 50 HELIX 126 949 134 COLOUR_TEXT_REGION 126 949 134 949 50 HELIX 151 949 162 COLOUR_TEXT_REGION 151 949 162 949 50 STRAND 45 950 47 COLOUR_TEXT_REGION 45 950 47 950 51 STRAND 52 950 61 COLOUR_TEXT_REGION 52 950 61 950 51 STRAND 72 950 72 COLOUR_TEXT_REGION 72 950 72 950 51 STRAND 77 950 79 COLOUR_TEXT_REGION 77 950 79 950 51 STRAND 106 950 111 COLOUR_TEXT_REGION 106 950 111 950 51 STRAND 117 950 121 COLOUR_TEXT_REGION 117 950 121 950 51 STRAND 140 950 145 COLOUR_TEXT_REGION 140 950 145 950 51 HELIX 25 950 40 COLOUR_TEXT_REGION 25 950 40 950 50 HELIX 48 950 51 COLOUR_TEXT_REGION 48 950 51 950 50 HELIX 83 950 91 COLOUR_TEXT_REGION 83 950 91 950 50 HELIX 104 950 105 COLOUR_TEXT_REGION 104 950 105 950 50 HELIX 125 950 134 COLOUR_TEXT_REGION 125 950 134 950 50 HELIX 148 950 162 COLOUR_TEXT_REGION 148 950 162 950 50