QUERY           : AMDKSAKAPQITIFDHRGCSRAPKESTGGKAGGQDDEMMVKVASTKVTVSESDAAKKLQEFITFEKGIDGPFTSKN : QUERY 
UniRef90_A8KCY2 : AMDKSGRAPVITIFDHRGCTHANKEYTGAKANSQDDEMCVKVASAKIAVSEGDAAKKLQEFISYQKGIDGPYTGK- : UniRef90_A8KCY2
UniRef90_A8KCW5 : -MDKSARAPEITIFDHRGCSRAPKEYAGAKAGTSDDEMCVKVASTKVEASLTLAEKKLQEFLSYQKGIDGDYTG-- : UniRef90_A8KCW5
UniRef90_L1JTP2 : SMDKSARAPVITIFDHRGCSRAPKEYTGGLSNTQDDQMCVKAQSLKIEVSEQTAAKLLQENLS------------- : UniRef90_L1JTP2
UniRef90_A8KCS8 : AMDKSGRAPVITVFDHRGCTHANKEYTGAKANSQDDEMLVKAQSVKIEVSAATADSVLQQTISTLKR--------- : UniRef90_A8KCS8
UniRef90_A8KCX4 : --PKDSLAPVITTFDHQFCDRAPKEYVGPASGDEDDNRCVKVALSKITVSETEAAAALQEFISYRKGIDGDFRG-- : UniRef90_A8KCX4
UniRef90_L1IL79 : -MPADGYAPVITVFDHRGCTRAPKEYNGPKSNDMEDGMLVKVESIKCKVTESYAASLLQEQLGY------------ : UniRef90_L1IL79
UniRef90_U5T880 : ARDAQLRAPIVEIFDARGCDAKNAQYTGPKSNDMNDDQCVKVSMQKITVSEATAAKKLQEFIGKATAINVPIIS-- : UniRef90_U5T880
UniRef90_A8KCU4 : AMDRSNTAPIVQIFDHRGCSRVAKEYTGKKCNGAEDEMLVKVQSKVIPAPEALAASVLQVTVGNLKR--------- : UniRef90_A8KCU4
UniRef90_L1IYK2 : -MDKKAIAPVITIFDHRGCDRITKEYQGRKANTYDDYMLVKVKGEVITVSTSTAASVLAETFGLLDR--------- : UniRef90_L1IYK2
UniRef90_L1I892 : -MRANFYAPEVTIFDHRGCNRAPKEYKGGKTGDQDDEMLVRVKSVKVFCPEAEAAKVLASTLSVLKK--------- : UniRef90_L1I892
UniRef90_P30943 : AMDKSAKAPVITIFDHRGCSRAPKEYTGAKAGGKDDEMMVKAQSVKIEVSTGTAEGVLATSLAKMTK--------- : UniRef90_P30943
UniRef90_L1J444 : ----DLRAPQITIFDHRGCSRAPKEYTGKRAGTYDDEMLVKIDFKAAEVNSKLAQQVLEQTIGVLKA--------- : UniRef90_L1J444
UniRef90_L1J444 : -----AFAPVITIFDNRGCEHKNKEYNGPKAGDENDEMLVKVANQKIPFPTDDVVEFRRENLAIQGNLD------- : UniRef90_L1J444
UniRef90_L1JDL0 : -MDKSNRAPVVTVFDHRGCQRGNTEYQGLPANSQDDEMLVKVAMQKVAINEAAATDLVQQLLGTLKK--------- : UniRef90_L1JDL0
UniRef90_P23815 : ----DLRTPVITIFDARGCDHANKEYTGPKAGGADDEMCVKVAMQKIAVAEDAAALVLKECLSELKA--------- : UniRef90_P23815
UniRef90_U5T8W5 : AKDAQLRAPVVTIFDARGCDHANKEYTDPKAGAENDECCVKVQMTPIKVADDAAALVLKECLSELKG--------- : UniRef90_U5T8W5
UniRef90_L1J381 : APKGKNFAPMITIFDARGCDRGGVEYKGPKAGTTDDEMLVKVELIGIKVPEYQAAAFTREQLGYT----------- : UniRef90_L1J381
UniRef90_U5TBU0 : ----SLSAPVITIFDARGCDHANKEYKGDWSGAEDDECCVKIQMQKISVAEDVARLVRLECLNELK---------- : UniRef90_U5TBU0
UniRef90_P23816 : ----DLRAPYVEIFDARGCDAKNSQYTGPKSGDMNDDQCVKVSMAVPKVSEATAEKKRQEFLGFETAINVP----- : UniRef90_P23816
UniRef90_L1K1P5 : -MPADSYTPIITIFDARGCPRGAGEYEGSPAGDNNDEMAVKVVLRKLEPDTGFAEQIKAETLG------------- : UniRef90_L1K1P5
UniRef90_A8KCV5 : -----NIAPVIQVHDERGCLRPRAEYTGAKVGTEDDAMCVSVKAKAIPANTNLAASILSDFQIY------------ : UniRef90_A8KCV5
UniRef90_L1J044 : --------PVITVFDHRGCSRSPKEYVGDKSGDQDDEMCVKVQMKPYTYPQYTATALLNEIIGYTKG--------- : UniRef90_L1J044
UniRef90_L1J5L2 : -------APIITVFDHRGCKRADSEYQGALANGPEDEMLVKVAYKKVPLSAGFADKVLQQTLGT------------ : UniRef90_L1J5L2
UniRef90_A2AX34 : -MKNKNFAPVITVFDHRGCEHVNKEYTGPKSNDENDEMLVKVKQTKLRRDDELADRIVQETKGT------------ : UniRef90_A2AX34
UniRef90_U5T8F7 : AMKKNSKAPCVTIFDERGCGGP----TRAKTGAGEEGLMVKIQMQEIKLGRGAGAEYVSIFTNYDKKLFG------ : UniRef90_U5T8F7
UniRef90_L1I9A0 : ---NKNAAPVITIFDHRGCEHQNKEYTGAPSNDYNDEMLVKVQS--VTLKRDDP-----KFLDMAKRVD------- : UniRef90_L1I9A0
UniRef90_P30942 : AMDKSAKAPQITIFDHRGCSRAPKSETGGTA-TKDDQMMVKVSQV------------------------------- : UniRef90_P30942
UniRef90_U5TBU5 : AMKKDSKAPCVEVFDERGCKAA-----GTQKASGDDGFCVKVSMKAIGFNAAEAASVTK----------------- : UniRef90_U5TBU5
UniRef90_L1JGF5 : ---------------------PRAEYTGAKVGTEDDAMCVSVKAKAIPANTNLAASILSDFQIY------------ : UniRef90_L1JGF5

                : 1---------11--------21--------31--------41--------51--------61--------71---- :
OrigSeq         : AMDKSAKAPQITIFDHRGCSRAPKESTGGKAGGQDDEMMVKVASTKVTVSESDAAKKLQEFITFEKGIDGPFTSKN : OrigSeq

Jnet            : --------EEEEEEE---------------------EEEEEEEEEE-----HHHHHHHHHHHHH------------ : Jnet
jhmm            : --------EEEEEEE----------EE---------EEEEEEEEE-----HHHHHHHHHHHHH------------- : jhmm
jpssm           : ---------EEEEE----------------------HHEEEEEEEE------HHHHHHHHHHHHH----------- : jpssm

Lupas 14        : ---------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -----B-BBBBBBBB--BB------B---------BBBBB-B-B--B-B---BB--BB--BB-B---B-B-B---- : Jnet_25
Jnet_5          : ---------BB-BB-----------------------BBB-B-----------B---------------------- : Jnet_5
Jnet_0          : ---------------------------------------B------------------------------------ : Jnet_0
Jnet Rel        : 8988788715787503467777777227777766410423455430267702278999999993016787752689 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.