SILENT_MODE
BLOCK_FILE jp_Vc9W_St.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_Vc9W_St.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 38   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 39 121 48 H SPACE
SUB_CHARS 1 39 121 48 E SPACE
SUB_CHARS 1 39 121 48 - SPACE
STRAND 26 42 30
COLOUR_TEXT_REGION 26 42 30 42 51
STRAND 35 42 40
COLOUR_TEXT_REGION 35 42 40 42 51
STRAND 44 42 50
COLOUR_TEXT_REGION 44 42 50 42 51
STRAND 79 42 82
COLOUR_TEXT_REGION 79 42 82 42 51
STRAND 88 42 95
COLOUR_TEXT_REGION 88 42 95 42 51
HELIX 3 42 13
COLOUR_TEXT_REGION 3 42 13 42 50
HELIX 58 42 69
COLOUR_TEXT_REGION 58 42 69 42 50
HELIX 102 42 119
COLOUR_TEXT_REGION 102 42 119 42 50
STRAND 26 47 29
COLOUR_TEXT_REGION 26 47 29 47 51
STRAND 35 47 40
COLOUR_TEXT_REGION 35 47 40 47 51
STRAND 44 47 49
COLOUR_TEXT_REGION 44 47 49 47 51
STRAND 80 47 83
COLOUR_TEXT_REGION 80 47 83 47 51
STRAND 88 47 95
COLOUR_TEXT_REGION 88 47 95 47 51
HELIX 2 47 13
COLOUR_TEXT_REGION 2 47 13 47 50
HELIX 58 47 69
COLOUR_TEXT_REGION 58 47 69 47 50
HELIX 102 47 119
COLOUR_TEXT_REGION 102 47 119 47 50
STRAND 25 48 30
COLOUR_TEXT_REGION 25 48 30 48 51
STRAND 35 48 40
COLOUR_TEXT_REGION 35 48 40 48 51
STRAND 45 48 50
COLOUR_TEXT_REGION 45 48 50 48 51
STRAND 77 48 81
COLOUR_TEXT_REGION 77 48 81 48 51
STRAND 89 48 95
COLOUR_TEXT_REGION 89 48 95 48 51
HELIX 3 48 12
COLOUR_TEXT_REGION 3 48 12 48 50
HELIX 60 48 69
COLOUR_TEXT_REGION 60 48 69 48 50
HELIX 102 48 119
COLOUR_TEXT_REGION 102 48 119 48 50