QUERY : SWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLWLARSLAWHRCEDAMVKALTLTAAQKSGALPLRAGWLGESQLVLFVSLDERSLTLPLLHQAFEQLLRLQQEVLA : QUERY
UniRef90_UPI0002D41F55 : NWIDASVDDFCRGMGLEAVNFSSGRVQLSFEQSGTLYLEKYQDCLFLMLVKALPWHQSNESIKKALSFCHSGQGWPFTIKTGLFDEQALVFSAQIEGDEVTLPTIEQAFALLVRLHNDVV- : UniRef90_UPI0002D41F55
UniRef90_E3BLV0 : TWIDTSVDDFCRGMGLDAVDFSSGRVQLGFEQSGTLHIEKYQDRLFLMLARPLDWRQSSEPLKRALSFCHAGQGWPFLIKAGLLDDQTLVLCAQIVGEDVTLPTIEQAFNLLVRLHDEVA- : UniRef90_E3BLV0
UniRef90_F9T799 : NWIDSSVDDFCRGMGLDTVDFASGRVQLTFQLSGTLHIERHQDNLFLMLSRGISWHQSSDLLKDALALCNFDNGWPFSVRTGLLGEETLVFSAQINGEEVTIPSLEQAFALLIRLHNEVVG : UniRef90_F9T799
UniRef90_S5J728 : SWIDASVDEFCRGMGLDAVDFAAGRVQLSFEQSGTLHIEKHHDRLFLMLARALSWHQSGERIQHALRLCHAEQGWPFEMKTGLLDDETLVFSAKIEGDEVTLPTLEQAFALLVRLHDEVAS : UniRef90_S5J728
UniRef90_Q7N0W5 : NWIEPQLLQFCQDLGMEMSDASSPLIQIDFEYSGTLQIERYGGALTLWLGREIPWHQGKEAMVKAMLLTFSGQGPELPLRCGWLGEDRLLLFVTLDERHITLPLLHQAFRSLLRVQREVLA : UniRef90_Q7N0W5
UniRef90_U3CHZ1 : NWIDASVDDFFRGMGLDNIDFSLGRAQLSFEESGTLHIERHENRLYLMLSKPLPWDGFSRYAQAALTLCHADNGWPFVIKAGLLDEQNLVFSAEIEAQEVTLPTIEQAFALLNRLHEKVI- : UniRef90_U3CHZ1
UniRef90_A4SUH5 : NWIEPLLVQFCQDLGITIGDNPHSLIQLELEQSGTLQLERHQGQLTLWLARAVPWHQSGEAIRRAMTLTAAAQGPALPVRSGWLGEEQLILFVSLDERAVTLPQLHQAVTTLTRLQREVLA : UniRef90_A4SUH5
UniRef90_M9S9V4 : DWVELAVAQFCQDLRVSVPAPLARVVQLDFEDSGTLQLERHGEQLSLWLACDLAWHQAYRGTLRALRLCHARAAGSLPLRCAWSGESRLLLCITLEARQVGIPTLHQALQALRSARSEVLA : UniRef90_M9S9V4
UniRef90_UPI00036F5AAE : DWRNNVITELGEGMGIRGLDFGDGVVCFQIEGAGSLYMEQKEDGILMYLVREMDSFNSLPILERALAECHYKKSFPYPLQVGV-QENQLFICLFIHDVDFNRPSVESAMQFLMNKVDEL-- : UniRef90_UPI00036F5AAE
UniRef90_UPI000467FF7E : -WIDQALAQFCQDLGVAVPAPAGALIQLEFEETGTLQLEQHDRKLTLWLAVDLAWHQVHQGGIRALALTFSGTGPQLPLRCAW-ASGRLLLLITLDERRITAPVLHQALHTLSSARRTVL- : UniRef90_UPI000467FF7E
UniRef90_Q2SC38 : NAIHNMLNAYGRSMGVNGV--GEGVTALSYETGERITLDQRDDCLAVSLSYELPEFEVDEVAEKLLQLTHYQTSTDYPIQPGLMGERRLVMTICMNASEASIDFLDGAIRRLRHRYQELTG : UniRef90_Q2SC38
UniRef90_W6MA07 : NLIDDVLHDFGRHIGIAGLTDGGTVAGLNFERRGALFFERATDAVLVYLARQTPSHDSA-PLERALRCTHYREGHLLPVQAGLLGEDTLVLLARLEERAFSLPVLEKTVTLLTELHDRVAA : UniRef90_W6MA07
UniRef90_M1GI40 : --ITHEIEEFGRRMGMSDLESQDGIIAFEVEDLGSLHIEQDEENLFIYLATPVPPYN-NDIPKKVLELCSYKHAHPFILHGGIHND-NVIFLSRISYRDVKASTIENTTQFLISITQKVL- : UniRef90_M1GI40
UniRef90_UPI000371D201 : SAITDTMTEFLSQLGFENFSWQGTPLNLSFEHSGSLQIEPTNNGLLLARLHQINEFDIPDLVPKALRLVHSDQQLPFTVQTGLKGSSHLAFVTTLSPKQLTISGLTAALDLLGFLHDQLA- : UniRef90_UPI000371D201
UniRef90_W9VF68 : --IGSALDQLAQGLGFEDFRWADGRAVFAFERRGTLYLEAHGDGLLMSLSRPFDDRENGRRLCRALRLCHYRHDWPCAVQVGLGDGSNLLFLARLPAAEVTLPVLEQTLELLTRLHER--- : UniRef90_W9VF68
UniRef90_E5Y9V8 : --IEREIAEFGRRMGMPAFSSPAGLAALDVERLGRLHLELAENALLVYLARAVPEYDVK-APRRVLERCHYRHADPMPLSGGVH-KGNIVLLTRFPERQATAAGIERAVQFLSGVMDTVA- : UniRef90_E5Y9V8
UniRef90_A1VHV0 : --LQDTIAAFARRMGMTGVPSAGGLAAFDIDGVGRLYVEPSDDTLLVYLARAVPAHETHLP-RRLLDLSHYRHAWPLPLQGGMHGGQAVVL-TRLDGRTATAVDVENAAVLLAGVLDRATA : UniRef90_A1VHV0
UniRef90_V6URX1 : ---TAAVAQFCRHLGVAPAHWQEPLLRLELPGAGVLQLERRGGQLTLWLEFPVHGAMFERAMQCALRQVYEHQAPGCLLRCGLLADDRLVLLAGLDEHGLTEQALHLAYRLLTRVRTEVLA : UniRef90_V6URX1
UniRef90_Q2SH41 : -AVHLTITEFLQQLGFADFIWRGEPLTLAFERSGTLMIEPHEQGLLLVRLQEISEYDCADLIPKALRAVHYDQPLPLRAHTGMKGASQLAFIVALSRQQLSIAGLNEALGVLDYLHQQL-- : UniRef90_Q2SH41
UniRef90_B6WRJ7 : --LNHELNTFGLRMGLPGLAFPQGLVALDVSGMGRLYFEKQEEELLVYLARPFPPHDSTLP-ERALALCHYRHARAFSLTAGMKGD-NLILLTRLPERQATAALLEEAVMELARVMNHLQG : UniRef90_B6WRJ7
UniRef90_UPI0001744C94 : --IDQTVSEFGQSMGMAHLQPNEGAVILDISGIGTLSIELVGDRVAVSLSRRIEPPDAA-ACQMALEMTHPRQPGSWPVRAALAGRGVLVFSARMETYEFNLPALHEAIAQLEALQD---- : UniRef90_UPI0001744C94
UniRef90_B8DMR9 : -----AIASFGQRMGMSGLQLPGRLIALDVDGMGRLHLEAADGELLIYLSRPFPAHDADMP-RRMLALCHYRHARPLPLQAGVHA-GQAILLTRLPERLATAAAMETATDLLARIMDEATG : UniRef90_B8DMR9
UniRef90_F8JFE9 : ---HSAIATFCESLGIPLSPGLSLPLALEFERSGTLRLEENGAGGYLTLAREVPLHRRG-VAAAVLRAAHPDRSMPLRVKAGFHGDETLVLMTGLAKEVADAPAIASALRMLVRLADEVDS : UniRef90_F8JFE9
UniRef90_A0P0P0 : ----AVVREFTRNLGLGDVQPVEGSVSFEFERAGTFSITRDGRRMLLSLSRH-KGRLQARNLKDFLSLSSWDPVIGAPVNAGMSSQGGLVLVVALDGESQTLQMIELCLDRLIELH----- : UniRef90_A0P0P0
UniRef90_UPI00047A9697 : ---EAAAQAFCSTMGLPPQPLPLTLSL---ERSGNLHMESREGSFIMYLTRAMPLHR-KGAAAAALGAVHPDRALPFMVHVAFYGEALLVLLIRMTEEGIDLPTLETAAQILVRLVGEIDA : UniRef90_UPI00047A9697
UniRef90_H0F7W5 : NSLDRALSDFGAHIGMPGLALGGGNTALQLESGRRVVFEPAGDEVLVYLSEPVP-YDSAERLHKAWRRAHYSRLDGWPVQAALREQDRLLAVTRMAAADASAARLGQAVDYLSRWLD---- : UniRef90_H0F7W5
UniRef90_UPI000468253B : NSLDRALGAFGEHIGMDGLALGPGNVALQLESGRRVAIEAAGDEVLVYVSEPVP-YDAPQRLLQAWKRAHHSRLEGYAVQAALREQDRLLAVTRLPAAQAGAPALKQAVDALSRWLDDA-- : UniRef90_UPI000468253B
UniRef90_UPI0003B639FB : -----AVENLGNQMGIQLKLNDDGCASLNVGDQGSLFIERSQDTMAISFARKLDI-DVLPCLERGLELCRLKNEPRLGLRVGLFRDDTIVVVCKLEKHHINAGMTDQILPYLFETMDKII- : UniRef90_UPI0003B639FB
UniRef90_I9W9X0 : --IEQTLAAFGQETGLGALVLTEAPLHLALSDHEELIFERCPDGILLHLDTRVR-YDMPLVLASAMQRITADGATPYPVQVGMREGSWLIVGTRADERTFTLQWIELATAHLER------- : UniRef90_I9W9X0
UniRef90_UPI00037DA045 : ---------------------------LMFETGRQMTFEIVDTGLAITLRDPQPAYQSITHLEQMLYQSHFHQNPHPMLMPGWHGQDGLTLTVLLSRLDVTLPMLENVISRM--------- : UniRef90_UPI00037DA045
UniRef90_F4LEJ5 : NTADRALHQFGQDIGIEGLAFPSGSASLALSNGRRLGVECVAGAALVHLAQRV-ERDAASVLLAAWKRAHGQRGSAASIQTSLWSEGSIVAQTRLPERSLDAAALRLAVLGLTNWLDRLEA : UniRef90_F4LEJ5
UniRef90_G8PMM4 : SAIQSSLEAFANNMKIPFSPQADGSLSYLLSQSGELTFTPVENGIVVSLGRAMTG-DQNSANEALLTKAGFRPEIGTNLHAGKSKDGTLHLAVLYEAGQLSPAKLEQTVDYLIG------- : UniRef90_G8PMM4
UniRef90_R4XL42 : NGLDGALGAFGESIGLERLELGAGNLALQLDSGRRLAIEPIGDEVLVYVSEPVP-YDAAQRLLRAWRRAHHSRLEGLAVQAALRDQDGILALARLPAAQADAPALRRTVDQLARWLDD--- : UniRef90_R4XL42
UniRef90_UPI000371571F : --IQEEVKEFASRIGVDIAEFREHPLCFRVDGALDFCLEFRQNELILSLRFPVAGYD-HALLQKFLRHSSYEQVNTISYTMGYSGEQAL-MMTDIP-VTARAADIENAIILLKRQYEEIMA : UniRef90_UPI000371571F
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111------- :
OrigSeq : SWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLWLARSLAWHRCEDAMVKALTLTAAQKSGALPLRAGWLGESQLVLFVSLDERSLTLPLLHQAFEQLLRLQQEVLA : OrigSeq
Jnet : --HHHHHHHHHHH------------EEEEE----EEEEEE---EEEEEEE-------HHHHHHHHHHHH---------EEEE-----EEEEEEEE------HHHHHHHHHHHHHHHHHH-- : Jnet
jhmm : -HHHHHHHHHHHH------------EEEE-----EEEEEE---EEEEEE--------HHHHHHHHHHHH----------EEEE----EEEEEEEE------HHHHHHHHHHHHHHHHHH-- : jhmm
jpssm : --HHHHHHHHHH------------EEEEEE----EEEEEE----EEEEEE---------HHHHHHHHHH-------EEEEE-------EEEEEEE------HHHHHHHHHHHHHHHHHH-- : jpssm
Lupas 14 : --------------------------------------------------------------------------------------------------------CCCCCCCCCCCCCC--- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : --B--BB--BB--B-B--B-----BBBBBB--BBBBBBB----BBBBBBBB-B----B--BB-BBB-BBB------BBBBBBB----BBBBBBBB----B-B-BB--BB-BBB-BB--B-- : Jnet_25
Jnet_5 : --B---B--BB--B-B---------B-B-B-----B-B------BBBBB------------B--BB-BB-------BBB-BBB-----BBBBB-B---------B--BB--B--------- : Jnet_5
Jnet_0 : ------B---B----------------B------------------B-B------------B--BB------------B-B---------B-------------B--B------------- : Jnet_0
Jnet Rel : 8038999998621677777777751689814885589985587279988047788770368899888614788875302751278871588886057876378999999999999988518 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.