QUERY           : DIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEGKNELDPEADSFDKVILPIASMFVKSVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLSALDEEFDVVATKW : QUERY 
UniRef90_C5E1D0 : -LELTPEVLSILKEHTEVFSKYLSCYIHALNKFIGFLRKASSLRFERTVLIKYVKKLRFINDSLIAYNFEAEFP------DPNNTHLDEAVKPLASFLLKSIELLDLLNYFLTQPLQKEIISKTLNSDLNLSGECIVAIEDTYNHFVKFAQWMIESLQIENTFFQIEVVQFTRKCAIEDNIFLQQVVPVTDTEEYEVIAEEWAHILADKTLQLETKFNENVINW : UniRef90_C5E1D0
UniRef90_H2AU96 : -LSMTREIVDALSQIIPLFSKYLSSYIHLLNKFISHLRRVASLRYERTTLIKYVKKLRYFNDMLLEYDISETLN---------YVSLSDGIKPIASHFSKILEALDLLNFYFTQSLQKEIISKTLNFELTLADSCILAIDDAYNHFVKYTQWMVESIGAGSQFLDLEVVRFALKCAEEDNIFLQEVIEVNDEREYEHVTKQWGNVLKEKMVTLETEYTSTATKW : UniRef90_H2AU96
UniRef90_G8ZLQ1 : -MTVVEGISTNLAETSELFSSYISSYVHFLNKFIGHLRRVASLRYERTTLIKFVKKLRFLNESLTSYDVS------SNMAKFNEKNFGVAVIPLASFYLKCIELFDMLDFYLTKPLQNEIVSKTLNKDLCLSEECIIAIDDTHNHFVKFTQWMVESLENADPLLQIEVVQFARKCAVADNILLQEVEPVADAAEYEELSSKWASVLEAKLQALQVIFDDEMAAW : UniRef90_G8ZLQ1
UniRef90_J7S2P0 : DLVINEDIALTLERAIGTFSNYLSGNIHVLNKFIGHLRRVGVLKYERTTIIKFVKKLRFFNDTLLQYKQSLF-----NEVK-IGTSLTQSVIPVGSFFIKALEVMDLLNFFFTQSLQREIISKTLNFDLTLEESCILTIEDAYNHFVKYTQWMLESLGQTDILLRLEVITFALKCAEQDNIFLQEVIVVEDEQQYNELAGAWDSVLRDKISALESELLKASNDW : UniRef90_J7S2P0
UniRef90_G0V696 : -LYITEDIVVALTKAIELHSVYFSNHINILNKFIGHLRKVSTLRFERTTLIKFVKKLRFFNDSLLKFDISSYLVE---------EDLSALLIPLGSFFIKCLETFDLLNYYFTQSLQKEIIAKTLNTNLNLSTDTIIIMDDTYNHFIKFSQWLIESLELESPLLNMEIIEFSRKCAIEDNIFLQEVVPVDDEEEFESLANQWTQILEQKLEILQEEFEETASNW : UniRef90_G0V696
UniRef90_W0T8N9 : -LVLTDEIKESLEQLVAVYSNYISRYVEFMNNLIGMQRRVSTLRFERMTLIKYVKKLRFMNDILHSWKV-ELSGSSSND----GMTLREAIDPLGSYLIKVFEVLDLLNFYITQPLRGETISKTLNEDLVLSEETIECINETYRVYVKGIQWLVESIGGPGEGEDMELVEFARKCAIEDDILLQDVAVVDSGEEFHELLCDWTSILGEKGTELKELFNQDSTKW : UniRef90_W0T8N9
UniRef90_Q758R0 : -LQITGKILQLTEEVIQEQANYISRYIDFLNKYINYQRKVSTLRFERATLIKYVKKLRFLNDFLYTYNA---------DVNMITEPLQKLVRPLGSFFIRYLEIIDLLNYYLTQSLRNETISKTLNQDLVLSQECIAMADKTYRVYVKFVQWFIESSSVTTGDLTMEIVQFTRKCAVEDGILLQEVQLVTSSEEFEDLLEKWQQVLHFQCADLDDTFNDNIRHW : UniRef90_Q758R0
UniRef90_G8BW48 : ELELTPELHSIFMEIKDLFSVYISSYVHVLNKFIGILRKISTLRFERSTLIKYVKKLRFYNDRLSNF---EFSDPANAECSVPVES---VVREISAFYLKVLETIDILNYYLTRSLQSEIVSKTLNFNLTLPDDTISRIEESYNCFIKFVQWMMESISINDELLQIEIIQFSLKCAIEDNIFLTEVTPVEDIEEYETLALQWSEVLSGSISALTNQFDQSVVVW : UniRef90_G8BW48
UniRef90_Q6FMJ2 : -IVATDGIVDALTKISSVFSAYLSANIHILNKYINYLRRVTSLKNERSIMIKIVKKLRFFNDTLLSTDLAQLQTTYEGEEPE----LALNIQTFASYLVKCLETIDLLNYFLLKPLQKELIAKTLNFDLVFPEDITDTVEDTYNHFVKFTQWSIESLSIDDPLLDIEVVQFSLRCAEEDNIFLQEVLPVKDSQEYETLTLQWLDVLNGKLAILGERFEKVADDW : UniRef90_Q6FMJ2
UniRef90_C5DGE2 : ---ANENVLKSLQLAIQSYSNYLSSYIDALNKYISHQRRVSTLRFERATLIKYVKKLRFFNEELMSMDMVQQYRGG--------NLIKTAVCSLASFFIRCLEVMDLLNYYLTQSLKNETISKTLNRDLVVSEDCVVFLESTYRHYVKFTQWMLEALDIHDATLTVEVLQFARKCAKEDDILLQEVGVVSSASEYQELLDEWCLVLSEQYMGLTKAFEAETTRW : UniRef90_C5DGE2
UniRef90_G0WB99 : -LRVTDEIITSLTSIIELYVEYVTHNIQLLNKFIGHMRRVSTLRFERTTLIKFVKKLRFYNESLQNINIKEYT--------SAHDDLSFIVVFFGSFSIKFLETLDLLKYFFTESLQKEILSKTLNSDLTLSSETILNMDITYNHFVKFTQWMIESINLQNNLLSLEIIEFTLKCAAEDNIFLQQVATVEDEEEYQYLMDQWSQVLREKVQVLEDSFEVDAAVW : UniRef90_G0WB99
UniRef90_A7TDZ7 : ---------DIFEQIKEVFSTYISSYVHILNKFIGILRKVSTMRFERSTLIKYVKKLRFFNETLLNYEFPLLTSSD-------ITTVRLQVKAIGSFFIKFLEMQDILNYYLTQSVQNEVISKTLNYKLNFPDAAIERIEDSYNHFVKFTQWMMQSLLIDDELSQIEVIQFSIKCAVEDNIFLQEVAPVESLAEYMELSEEWVAILKDLIARMENEFSLAVVQW : UniRef90_A7TDZ7
UniRef90_Q6CVF1 : QVVISKEILDAVLQLVSTYSNYISRYVDYLNNLIAVQRRVSTLRFERMTLIKYVKKLRFMADVLHSWSF-------EGENDLIGKRLNEVIDPLGAYLIKVFEILDLLNFYITQPMRGETISKTLNEDLVVSEETIVCINDSYRIYIKGIQWLVESINGNCPHLALELIEFTRKCAIEDDILLQDVAIVEVEEEYVDLLHDWSAILVQKQTEMKELFSEDSKRW : UniRef90_Q6CVF1
UniRef90_I2H018 : -MILTEDILQAYEKSTLTFSKYLSSYVTVLNKYISVLGKASTLKNERSTLIKYVKKLRFFNDCIVRFDIRE---------ESANRNIQHLITIIGSFFIKYLEIIDLLNYFFTQSLQNEILTKTLNSKLLLPPSAIKSIEDSHNHFVKFAQWIIESINFDSSLLQLEVIQFNLRIAIEDNIFLQEVIAVESEDEYVKLILQWTDILGEKVSTLNAQFHGASNQW : UniRef90_I2H018
UniRef90_I2H8M3 : ---------------VRVFVHYIDCYVGFLNKYIGLLRRQQCLRFERSVVIKFVKKMRFVSNSLVEFRT----KLDTNQLDESIDS-EQLIVLIGSQYLKFIEILDLLTYYLTQPLSNETIIKTLNSNYIIPPECVTVFEDTNNHILKFIQWFLESININDSFLKSEVIQFALKWAREDNMFLQEIIQVDDIEEYEELLIDWTNILVEKVSSLRESFESTMVV- : UniRef90_I2H8M3
UniRef90_G8BVZ8 : ---LTNKSTPVILEAIHIFIKYISDNINLLNNYILLMKKVTSLNYERTCLIKFVKKLRFYNETLRN---SHLFNMESNFKFENVDIINRVIL-LNSIFIKNLETLDLLNFQLTRSLQNEIWMKTLNEKLLIPEKNVAMIEDVYNHYIKFIQWLSETIGMHDSTGQLEVITQTIRYAQEDNIFLQTVIPSKNEEEYIQTLKEWLNILTAKNQQFQANFEDITSIW : UniRef90_G8BVZ8
UniRef90_A7TSL4 : ---LTKDIENALKELIPLFKKYISVNVQLLNDYILVLKRASCLKNERIALIKFVKKLRFFSQSLH---RTMFFDDLHSRKD---DSLLHCVGIIGAYFVKCLETLDLLYFFLTKPLQTEILSKTLNEKLILKDSTVVNLEDTFSYFVKFTQWLLESLGLNDPLYQIEIIHFSVKYAVEEGIDIEDILPCNGNPKWRMISIKM--LLNGK--------------- : UniRef90_A7TSL4

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221- :
OrigSeq         : DIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEGKNELDPEADSFDKVILPIASMFVKSVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLSALDEEFDVVATKW : OrigSeq

Jnet            : --EE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-------HHHHHHHHHH---EEHHHHHHHHH---------HHHHHHHHHHHHH-----EEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm            : --EE-HHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHH----HHHHHHHH--HHHHHHHHHHHHH-HH---------------HHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHH-------HHHHHHHHHH--EEEHHHHHHHHH-------EEEEEEHHHHHHHHH------EEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm           : ---E--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHH----EHHHHHHHHHHH-------HHHHHHHHHHHHHH----EEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -B-BB--BB-BB--BB-BBB-BBB-BB-BBB-BBBBB--BBBB-BBBBBBBBBB--BBBBB-BBB-B-B--BB------B---B--B--BB-BBBBBBBBBBBBBBBBBBBBB--B---BBB-BB---B-B---BB-BB--BB-BBBBBBBBBBBBB-----BB-BBBB-BBB-BB----BBB--BB-B-----B--BB--BB-BB---B--B---B---B--B : Jnet_25
Jnet_5          : -------B---B--B-------B---B-BB---B-----B-BB-----BBB--B-----B---B----------------------B--BB--BB------B-----B------------B-------------BB--B--B--B-B-BB-BBB-----------B-BB--B---B------------------B--B---B---B------B----------- : Jnet_5
Jnet_0          : -----------B-----------------B--------------------------------------------------------B-------B---------------------------------------B------B--------------------------B------------------------------------------------------- : Jnet_0
Jnet Rel        : 98105128999999999999999949999999993112987123237999999329999999998862231467777777777640899999999999999999999943862114306998875168877512478776306710026788887515888861001249999998615883306775166589999999999999999998888988886289 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.