SILENT_MODE
BLOCK_FILE jp__zBQM2d.concise.blc
MAX_NSEQ 891
MAX_INPUT_LEN 893
OUTPUT_FILE jp__zBQM2d.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 102 880   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 881 102 890 H SPACE
SUB_CHARS 1 881 102 890 E SPACE
SUB_CHARS 1 881 102 890 - SPACE
STRAND 5 884 12
COLOUR_TEXT_REGION 5 884 12 884 51
STRAND 43 884 50
COLOUR_TEXT_REGION 43 884 50 884 51
STRAND 53 884 62
COLOUR_TEXT_REGION 53 884 62 884 51
STRAND 87 884 94
COLOUR_TEXT_REGION 87 884 94 884 51
HELIX 17 884 34
COLOUR_TEXT_REGION 17 884 34 884 50
HELIX 65 884 83
COLOUR_TEXT_REGION 65 884 83 884 50
STRAND 5 889 12
COLOUR_TEXT_REGION 5 889 12 889 51
STRAND 43 889 50
COLOUR_TEXT_REGION 43 889 50 889 51
STRAND 53 889 62
COLOUR_TEXT_REGION 53 889 62 889 51
STRAND 87 889 94
COLOUR_TEXT_REGION 87 889 94 889 51
HELIX 17 889 33
COLOUR_TEXT_REGION 17 889 33 889 50
HELIX 65 889 83
COLOUR_TEXT_REGION 65 889 83 889 50
STRAND 5 890 12
COLOUR_TEXT_REGION 5 890 12 890 51
STRAND 44 890 50
COLOUR_TEXT_REGION 44 890 50 890 51
STRAND 53 890 61
COLOUR_TEXT_REGION 53 890 61 890 51
STRAND 87 890 94
COLOUR_TEXT_REGION 87 890 94 890 51
HELIX 17 890 34
COLOUR_TEXT_REGION 17 890 34 890 50
HELIX 65 890 83
COLOUR_TEXT_REGION 65 890 83 890 50