SILENT_MODE
BLOCK_FILE jp_2YAnHo3.concise.blc
MAX_NSEQ 179
MAX_INPUT_LEN 181
OUTPUT_FILE jp_2YAnHo3.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 73 168   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 169 73 178 H SPACE
SUB_CHARS 1 169 73 178 E SPACE
SUB_CHARS 1 169 73 178 - SPACE
STRAND 50 172 52
COLOUR_TEXT_REGION 50 172 52 172 51
STRAND 59 172 62
COLOUR_TEXT_REGION 59 172 62 172 51
STRAND 68 172 71
COLOUR_TEXT_REGION 68 172 71 172 51
HELIX 3 172 16
COLOUR_TEXT_REGION 3 172 16 172 50
HELIX 22 172 28
COLOUR_TEXT_REGION 22 172 28 172 50
HELIX 36 172 46
COLOUR_TEXT_REGION 36 172 46 172 50
STRAND 50 177 52
COLOUR_TEXT_REGION 50 177 52 177 51
STRAND 59 177 62
COLOUR_TEXT_REGION 59 177 62 177 51
STRAND 68 177 71
COLOUR_TEXT_REGION 68 177 71 177 51
HELIX 3 177 16
COLOUR_TEXT_REGION 3 177 16 177 50
HELIX 22 177 28
COLOUR_TEXT_REGION 22 177 28 177 50
HELIX 36 177 46
COLOUR_TEXT_REGION 36 177 46 177 50
STRAND 50 178 52
COLOUR_TEXT_REGION 50 178 52 178 51
STRAND 59 178 62
COLOUR_TEXT_REGION 59 178 62 178 51
STRAND 68 178 71
COLOUR_TEXT_REGION 68 178 71 178 51
HELIX 3 178 15
COLOUR_TEXT_REGION 3 178 15 178 50
HELIX 22 178 29
COLOUR_TEXT_REGION 22 178 29 178 50
HELIX 37 178 47
COLOUR_TEXT_REGION 37 178 47 178 50