SILENT_MODE
BLOCK_FILE jp_2VTmhX5.concise.blc
MAX_NSEQ 794
MAX_INPUT_LEN 796
OUTPUT_FILE jp_2VTmhX5.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 106 783   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 784 106 793 H SPACE
SUB_CHARS 1 784 106 793 E SPACE
SUB_CHARS 1 784 106 793 - SPACE
HELIX 3 787 15
COLOUR_TEXT_REGION 3 787 15 787 50
HELIX 21 787 32
COLOUR_TEXT_REGION 21 787 32 787 50
HELIX 37 787 43
COLOUR_TEXT_REGION 37 787 43 787 50
HELIX 48 787 89
COLOUR_TEXT_REGION 48 787 89 787 50
HELIX 92 787 103
COLOUR_TEXT_REGION 92 787 103 787 50
HELIX 3 792 15
COLOUR_TEXT_REGION 3 792 15 792 50
HELIX 21 792 32
COLOUR_TEXT_REGION 21 792 32 792 50
HELIX 37 792 43
COLOUR_TEXT_REGION 37 792 43 792 50
HELIX 48 792 90
COLOUR_TEXT_REGION 48 792 90 792 50
HELIX 92 792 104
COLOUR_TEXT_REGION 92 792 104 792 50
HELIX 2 793 16
COLOUR_TEXT_REGION 2 793 16 793 50
HELIX 21 793 32
COLOUR_TEXT_REGION 21 793 32 793 50
HELIX 37 793 43
COLOUR_TEXT_REGION 37 793 43 793 50
HELIX 48 793 89
COLOUR_TEXT_REGION 48 793 89 793 50
HELIX 92 793 103
COLOUR_TEXT_REGION 92 793 103 793 50