SILENT_MODE BLOCK_FILE jp_UUgk_7o.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_UUgk_7o.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 157 10 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 11 157 20 H SPACE SUB_CHARS 1 11 157 20 E SPACE SUB_CHARS 1 11 157 20 - SPACE STRAND 7 14 9 COLOUR_TEXT_REGION 7 14 9 14 51 STRAND 44 14 48 COLOUR_TEXT_REGION 44 14 48 14 51 STRAND 64 14 69 COLOUR_TEXT_REGION 64 14 69 14 51 STRAND 75 14 81 COLOUR_TEXT_REGION 75 14 81 14 51 STRAND 96 14 100 COLOUR_TEXT_REGION 96 14 100 14 51 STRAND 126 14 127 COLOUR_TEXT_REGION 126 14 127 14 51 HELIX 17 14 28 COLOUR_TEXT_REGION 17 14 28 14 50 HELIX 36 14 36 COLOUR_TEXT_REGION 36 14 36 14 50 HELIX 53 14 59 COLOUR_TEXT_REGION 53 14 59 14 50 HELIX 85 14 90 COLOUR_TEXT_REGION 85 14 90 14 50 HELIX 105 14 115 COLOUR_TEXT_REGION 105 14 115 14 50 HELIX 132 14 153 COLOUR_TEXT_REGION 132 14 153 14 50 STRAND 7 19 9 COLOUR_TEXT_REGION 7 19 9 19 51 STRAND 44 19 48 COLOUR_TEXT_REGION 44 19 48 19 51 STRAND 64 19 68 COLOUR_TEXT_REGION 64 19 68 19 51 STRAND 75 19 81 COLOUR_TEXT_REGION 75 19 81 19 51 STRAND 96 19 100 COLOUR_TEXT_REGION 96 19 100 19 51 HELIX 17 19 27 COLOUR_TEXT_REGION 17 19 27 19 50 HELIX 33 19 38 COLOUR_TEXT_REGION 33 19 38 19 50 HELIX 53 19 59 COLOUR_TEXT_REGION 53 19 59 19 50 HELIX 85 19 90 COLOUR_TEXT_REGION 85 19 90 19 50 HELIX 105 19 115 COLOUR_TEXT_REGION 105 19 115 19 50 HELIX 125 19 127 COLOUR_TEXT_REGION 125 19 127 19 50 HELIX 133 19 143 COLOUR_TEXT_REGION 133 19 143 19 50 HELIX 145 19 153 COLOUR_TEXT_REGION 145 19 153 19 50 STRAND 6 20 9 COLOUR_TEXT_REGION 6 20 9 20 51 STRAND 44 20 48 COLOUR_TEXT_REGION 44 20 48 20 51 STRAND 64 20 69 COLOUR_TEXT_REGION 64 20 69 20 51 STRAND 75 20 82 COLOUR_TEXT_REGION 75 20 82 20 51 STRAND 97 20 100 COLOUR_TEXT_REGION 97 20 100 20 51 STRAND 125 20 127 COLOUR_TEXT_REGION 125 20 127 20 51 HELIX 17 20 28 COLOUR_TEXT_REGION 17 20 28 20 50 HELIX 52 20 59 COLOUR_TEXT_REGION 52 20 59 20 50 HELIX 85 20 90 COLOUR_TEXT_REGION 85 20 90 20 50 HELIX 105 20 115 COLOUR_TEXT_REGION 105 20 115 20 50 HELIX 130 20 154 COLOUR_TEXT_REGION 130 20 154 20 50