Filename Description -------- ----------- jp_8Ltln3h.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_8Ltln3h.als Alscript command file. Used to generate PS/PDF outputjp_8Ltln3h.blast.gz PSIBLAST output (compressed) jp_8Ltln3h.coils.csv The output from coils in CSV format jp_8Ltln3h.coilseq.lupas_14 The output from coils using a window length of 14 jp_8Ltln3h.coilseq.lupas_21 The output from coils using a window length of 21 jp_8Ltln3h.coilseq.lupas_28 The output from coils using a window length of 28 jp_8Ltln3h.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_8Ltln3h.concise.blc A BLC file of the prediction and alignment jp_8Ltln3h.concise.pdf A PDF file of the prediction and alignment jp_8Ltln3h.fasta Input query sequence in FASTA format jp_8Ltln3h.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_8Ltln3h.hmm The HHMer2 profile of the alignment jp_8Ltln3h.html A HTML file of the prediction and alignment jp_8Ltln3h.input Your raw input jp_8Ltln3h.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_8Ltln3h.jnet The output from Jnet jp_8Ltln3h.profile PSIBLAST profile jp_8Ltln3h.pssm PSIBLAST PSSM in a format for Jnet jp_8Ltln3h.seq Your sequence jp_8Ltln3h.simple.html The brief HTML output of the query sequence and prediction only jp_8Ltln3h.svg.html A Jalview generated SVG file with summary of the results.