SILENT_MODE
BLOCK_FILE jp_2DPPRVc.concise.blc
MAX_NSEQ 761
MAX_INPUT_LEN 763
OUTPUT_FILE jp_2DPPRVc.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 124 750   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 751 124 760 H SPACE
SUB_CHARS 1 751 124 760 E SPACE
SUB_CHARS 1 751 124 760 - SPACE
STRAND 8 754 17
COLOUR_TEXT_REGION 8 754 17 754 51
STRAND 28 754 38
COLOUR_TEXT_REGION 28 754 38 754 51
STRAND 44 754 55
COLOUR_TEXT_REGION 44 754 55 754 51
STRAND 60 754 65
COLOUR_TEXT_REGION 60 754 65 754 51
STRAND 72 754 75
COLOUR_TEXT_REGION 72 754 75 754 51
STRAND 80 754 89
COLOUR_TEXT_REGION 80 754 89 754 51
STRAND 94 754 104
COLOUR_TEXT_REGION 94 754 104 754 51
STRAND 109 754 114
COLOUR_TEXT_REGION 109 754 114 754 51
STRAND 117 754 119
COLOUR_TEXT_REGION 117 754 119 754 51
STRAND 8 759 17
COLOUR_TEXT_REGION 8 759 17 759 51
STRAND 28 759 38
COLOUR_TEXT_REGION 28 759 38 759 51
STRAND 44 759 55
COLOUR_TEXT_REGION 44 759 55 759 51
STRAND 60 759 65
COLOUR_TEXT_REGION 60 759 65 759 51
STRAND 68 759 69
COLOUR_TEXT_REGION 68 759 69 759 51
STRAND 72 759 75
COLOUR_TEXT_REGION 72 759 75 759 51
STRAND 80 759 89
COLOUR_TEXT_REGION 80 759 89 759 51
STRAND 94 759 104
COLOUR_TEXT_REGION 94 759 104 759 51
STRAND 109 759 113
COLOUR_TEXT_REGION 109 759 113 759 51
STRAND 117 759 119
COLOUR_TEXT_REGION 117 759 119 759 51
STRAND 3 760 4
COLOUR_TEXT_REGION 3 760 4 760 51
STRAND 8 760 17
COLOUR_TEXT_REGION 8 760 17 760 51
STRAND 28 760 38
COLOUR_TEXT_REGION 28 760 38 760 51
STRAND 44 760 55
COLOUR_TEXT_REGION 44 760 55 760 51
STRAND 60 760 64
COLOUR_TEXT_REGION 60 760 64 760 51
STRAND 72 760 75
COLOUR_TEXT_REGION 72 760 75 760 51
STRAND 80 760 84
COLOUR_TEXT_REGION 80 760 84 760 51
STRAND 86 760 90
COLOUR_TEXT_REGION 86 760 90 760 51
STRAND 94 760 104
COLOUR_TEXT_REGION 94 760 104 760 51
STRAND 109 760 114
COLOUR_TEXT_REGION 109 760 114 760 51
STRAND 117 760 118
COLOUR_TEXT_REGION 117 760 118 760 51