SILENT_MODE
BLOCK_FILE jp_tpELI5x.concise.blc
MAX_NSEQ 723
MAX_INPUT_LEN 725
OUTPUT_FILE jp_tpELI5x.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 146 712   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 713 146 722 H SPACE
SUB_CHARS 1 713 146 722 E SPACE
SUB_CHARS 1 713 146 722 - SPACE
STRAND 3 716 5
COLOUR_TEXT_REGION 3 716 5 716 51
STRAND 17 716 18
COLOUR_TEXT_REGION 17 716 18 716 51
STRAND 26 716 29
COLOUR_TEXT_REGION 26 716 29 716 51
STRAND 35 716 36
COLOUR_TEXT_REGION 35 716 36 716 51
STRAND 59 716 61
COLOUR_TEXT_REGION 59 716 61 716 51
STRAND 135 716 143
COLOUR_TEXT_REGION 135 716 143 716 51
HELIX 43 716 53
COLOUR_TEXT_REGION 43 716 53 716 50
HELIX 86 716 95
COLOUR_TEXT_REGION 86 716 95 716 50
HELIX 100 716 114
COLOUR_TEXT_REGION 100 716 114 716 50
STRAND 2 721 5
COLOUR_TEXT_REGION 2 721 5 721 51
STRAND 17 721 19
COLOUR_TEXT_REGION 17 721 19 721 51
STRAND 26 721 29
COLOUR_TEXT_REGION 26 721 29 721 51
STRAND 35 721 37
COLOUR_TEXT_REGION 35 721 37 721 51
STRAND 59 721 62
COLOUR_TEXT_REGION 59 721 62 721 51
STRAND 135 721 143
COLOUR_TEXT_REGION 135 721 143 721 51
HELIX 43 721 52
COLOUR_TEXT_REGION 43 721 52 721 50
HELIX 65 721 69
COLOUR_TEXT_REGION 65 721 69 721 50
HELIX 88 721 95
COLOUR_TEXT_REGION 88 721 95 721 50
HELIX 99 721 114
COLOUR_TEXT_REGION 99 721 114 721 50
STRAND 3 722 5
COLOUR_TEXT_REGION 3 722 5 722 51
STRAND 17 722 18
COLOUR_TEXT_REGION 17 722 18 722 51
STRAND 60 722 61
COLOUR_TEXT_REGION 60 722 61 722 51
STRAND 135 722 144
COLOUR_TEXT_REGION 135 722 144 722 51
HELIX 43 722 55
COLOUR_TEXT_REGION 43 722 55 722 50
HELIX 83 722 95
COLOUR_TEXT_REGION 83 722 95 722 50
HELIX 103 722 112
COLOUR_TEXT_REGION 103 722 112 722 50