SILENT_MODE BLOCK_FILE jp_JrKMeFb.concise.blc MAX_NSEQ 299 MAX_INPUT_LEN 301 OUTPUT_FILE jp_JrKMeFb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 159 288 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 289 159 298 H SPACE SUB_CHARS 1 289 159 298 E SPACE SUB_CHARS 1 289 159 298 - SPACE STRAND 91 292 92 COLOUR_TEXT_REGION 91 292 92 292 51 STRAND 113 292 116 COLOUR_TEXT_REGION 113 292 116 292 51 STRAND 137 292 137 COLOUR_TEXT_REGION 137 292 137 292 51 HELIX 3 292 15 COLOUR_TEXT_REGION 3 292 15 292 50 HELIX 20 292 31 COLOUR_TEXT_REGION 20 292 31 292 50 HELIX 40 292 51 COLOUR_TEXT_REGION 40 292 51 292 50 HELIX 54 292 72 COLOUR_TEXT_REGION 54 292 72 292 50 HELIX 77 292 84 COLOUR_TEXT_REGION 77 292 84 292 50 HELIX 93 292 112 COLOUR_TEXT_REGION 93 292 112 292 50 HELIX 122 292 125 COLOUR_TEXT_REGION 122 292 125 292 50 HELIX 138 292 156 COLOUR_TEXT_REGION 138 292 156 292 50 STRAND 90 297 92 COLOUR_TEXT_REGION 90 297 92 297 51 STRAND 114 297 115 COLOUR_TEXT_REGION 114 297 115 297 51 STRAND 137 297 137 COLOUR_TEXT_REGION 137 297 137 297 51 HELIX 2 297 15 COLOUR_TEXT_REGION 2 297 15 297 50 HELIX 20 297 31 COLOUR_TEXT_REGION 20 297 31 297 50 HELIX 40 297 51 COLOUR_TEXT_REGION 40 297 51 297 50 HELIX 54 297 72 COLOUR_TEXT_REGION 54 297 72 297 50 HELIX 79 297 83 COLOUR_TEXT_REGION 79 297 83 297 50 HELIX 93 297 113 COLOUR_TEXT_REGION 93 297 113 297 50 HELIX 123 297 125 COLOUR_TEXT_REGION 123 297 125 297 50 HELIX 138 297 156 COLOUR_TEXT_REGION 138 297 156 297 50 STRAND 92 298 92 COLOUR_TEXT_REGION 92 298 92 298 51 STRAND 113 298 116 COLOUR_TEXT_REGION 113 298 116 298 51 STRAND 136 298 136 COLOUR_TEXT_REGION 136 298 136 298 51 HELIX 3 298 15 COLOUR_TEXT_REGION 3 298 15 298 50 HELIX 20 298 31 COLOUR_TEXT_REGION 20 298 31 298 50 HELIX 39 298 52 COLOUR_TEXT_REGION 39 298 52 298 50 HELIX 54 298 71 COLOUR_TEXT_REGION 54 298 71 298 50 HELIX 76 298 84 COLOUR_TEXT_REGION 76 298 84 298 50 HELIX 93 298 109 COLOUR_TEXT_REGION 93 298 109 298 50 HELIX 121 298 125 COLOUR_TEXT_REGION 121 298 125 298 50 HELIX 137 298 155 COLOUR_TEXT_REGION 137 298 155 298 50