SILENT_MODE BLOCK_FILE jp_nt_AF0l.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_nt_AF0l.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 166 20 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 21 166 30 H SPACE SUB_CHARS 1 21 166 30 E SPACE SUB_CHARS 1 21 166 30 - SPACE STRAND 34 24 39 COLOUR_TEXT_REGION 34 24 39 24 51 STRAND 42 24 45 COLOUR_TEXT_REGION 42 24 45 24 51 STRAND 49 24 51 COLOUR_TEXT_REGION 49 24 51 24 51 STRAND 58 24 61 COLOUR_TEXT_REGION 58 24 61 24 51 STRAND 66 24 70 COLOUR_TEXT_REGION 66 24 70 24 51 STRAND 74 24 81 COLOUR_TEXT_REGION 74 24 81 24 51 STRAND 100 24 102 COLOUR_TEXT_REGION 100 24 102 24 51 STRAND 134 24 141 COLOUR_TEXT_REGION 134 24 141 24 51 HELIX 3 24 27 COLOUR_TEXT_REGION 3 24 27 24 50 HELIX 85 24 95 COLOUR_TEXT_REGION 85 24 95 24 50 HELIX 106 24 112 COLOUR_TEXT_REGION 106 24 112 24 50 HELIX 121 24 129 COLOUR_TEXT_REGION 121 24 129 24 50 HELIX 146 24 162 COLOUR_TEXT_REGION 146 24 162 24 50 STRAND 34 29 39 COLOUR_TEXT_REGION 34 29 39 29 51 STRAND 42 29 45 COLOUR_TEXT_REGION 42 29 45 29 51 STRAND 58 29 61 COLOUR_TEXT_REGION 58 29 61 29 51 STRAND 66 29 70 COLOUR_TEXT_REGION 66 29 70 29 51 STRAND 73 29 81 COLOUR_TEXT_REGION 73 29 81 29 51 STRAND 99 29 103 COLOUR_TEXT_REGION 99 29 103 29 51 STRAND 134 29 142 COLOUR_TEXT_REGION 134 29 142 29 51 HELIX 3 29 14 COLOUR_TEXT_REGION 3 29 14 29 50 HELIX 16 29 27 COLOUR_TEXT_REGION 16 29 27 29 50 HELIX 85 29 85 COLOUR_TEXT_REGION 85 29 85 29 50 HELIX 87 29 94 COLOUR_TEXT_REGION 87 29 94 29 50 HELIX 106 29 111 COLOUR_TEXT_REGION 106 29 111 29 50 HELIX 121 29 129 COLOUR_TEXT_REGION 121 29 129 29 50 HELIX 146 29 162 COLOUR_TEXT_REGION 146 29 162 29 50 STRAND 34 30 35 COLOUR_TEXT_REGION 34 30 35 30 51 STRAND 42 30 45 COLOUR_TEXT_REGION 42 30 45 30 51 STRAND 48 30 51 COLOUR_TEXT_REGION 48 30 51 30 51 STRAND 58 30 61 COLOUR_TEXT_REGION 58 30 61 30 51 STRAND 65 30 69 COLOUR_TEXT_REGION 65 30 69 30 51 STRAND 74 30 81 COLOUR_TEXT_REGION 74 30 81 30 51 STRAND 135 30 141 COLOUR_TEXT_REGION 135 30 141 30 51 HELIX 3 30 27 COLOUR_TEXT_REGION 3 30 27 30 50 HELIX 84 30 96 COLOUR_TEXT_REGION 84 30 96 30 50 HELIX 105 30 113 COLOUR_TEXT_REGION 105 30 113 30 50 HELIX 121 30 129 COLOUR_TEXT_REGION 121 30 129 30 50 HELIX 134 30 134 COLOUR_TEXT_REGION 134 30 134 30 50 HELIX 146 30 162 COLOUR_TEXT_REGION 146 30 162 30 50