SILENT_MODE BLOCK_FILE jp_vwyLz5F.concise.blc MAX_NSEQ 912 MAX_INPUT_LEN 914 OUTPUT_FILE jp_vwyLz5F.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 411 901 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 902 411 911 H SPACE SUB_CHARS 1 902 411 911 E SPACE SUB_CHARS 1 902 411 911 - SPACE STRAND 54 905 56 COLOUR_TEXT_REGION 54 905 56 905 51 STRAND 60 905 63 COLOUR_TEXT_REGION 60 905 63 905 51 STRAND 260 905 265 COLOUR_TEXT_REGION 260 905 265 905 51 STRAND 284 905 291 COLOUR_TEXT_REGION 284 905 291 905 51 HELIX 6 905 8 COLOUR_TEXT_REGION 6 905 8 905 50 HELIX 13 905 24 COLOUR_TEXT_REGION 13 905 24 905 50 HELIX 27 905 47 COLOUR_TEXT_REGION 27 905 47 905 50 HELIX 99 905 163 COLOUR_TEXT_REGION 99 905 163 905 50 HELIX 169 905 205 COLOUR_TEXT_REGION 169 905 205 905 50 HELIX 225 905 255 COLOUR_TEXT_REGION 225 905 255 905 50 HELIX 298 905 366 COLOUR_TEXT_REGION 298 905 366 905 50 HELIX 371 905 406 COLOUR_TEXT_REGION 371 905 406 905 50 STRAND 53 910 57 COLOUR_TEXT_REGION 53 910 57 910 51 STRAND 60 910 63 COLOUR_TEXT_REGION 60 910 63 910 51 STRAND 85 910 87 COLOUR_TEXT_REGION 85 910 87 910 51 STRAND 90 910 93 COLOUR_TEXT_REGION 90 910 93 910 51 STRAND 259 910 263 COLOUR_TEXT_REGION 259 910 263 910 51 STRAND 265 910 267 COLOUR_TEXT_REGION 265 910 267 910 51 STRAND 284 910 291 COLOUR_TEXT_REGION 284 910 291 910 51 HELIX 13 910 24 COLOUR_TEXT_REGION 13 910 24 910 50 HELIX 27 910 47 COLOUR_TEXT_REGION 27 910 47 910 50 HELIX 99 910 163 COLOUR_TEXT_REGION 99 910 163 910 50 HELIX 169 910 204 COLOUR_TEXT_REGION 169 910 204 910 50 HELIX 225 910 255 COLOUR_TEXT_REGION 225 910 255 910 50 HELIX 300 910 368 COLOUR_TEXT_REGION 300 910 368 910 50 HELIX 371 910 406 COLOUR_TEXT_REGION 371 910 406 910 50 STRAND 261 911 264 COLOUR_TEXT_REGION 261 911 264 911 51 STRAND 285 911 292 COLOUR_TEXT_REGION 285 911 292 911 51 HELIX 6 911 9 COLOUR_TEXT_REGION 6 911 9 911 50 HELIX 12 911 24 COLOUR_TEXT_REGION 12 911 24 911 50 HELIX 27 911 39 COLOUR_TEXT_REGION 27 911 39 911 50 HELIX 42 911 47 COLOUR_TEXT_REGION 42 911 47 911 50 HELIX 98 911 162 COLOUR_TEXT_REGION 98 911 162 911 50 HELIX 169 911 206 COLOUR_TEXT_REGION 169 911 206 911 50 HELIX 227 911 241 COLOUR_TEXT_REGION 227 911 241 911 50 HELIX 243 911 254 COLOUR_TEXT_REGION 243 911 254 911 50 HELIX 298 911 365 COLOUR_TEXT_REGION 298 911 365 911 50 HELIX 371 911 406 COLOUR_TEXT_REGION 371 911 406 911 50