SILENT_MODE
BLOCK_FILE jp_0rQmZoH.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_0rQmZoH.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 100 17   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 18 100 27 H SPACE
SUB_CHARS 1 18 100 27 E SPACE
SUB_CHARS 1 18 100 27 - SPACE
STRAND 30 21 34
COLOUR_TEXT_REGION 30 21 34 21 51
STRAND 40 21 48
COLOUR_TEXT_REGION 40 21 48 21 51
STRAND 52 21 57
COLOUR_TEXT_REGION 52 21 57 21 51
STRAND 61 21 62
COLOUR_TEXT_REGION 61 21 62 21 51
STRAND 68 21 70
COLOUR_TEXT_REGION 68 21 70 21 51
STRAND 75 21 79
COLOUR_TEXT_REGION 75 21 79 21 51
HELIX 6 21 24
COLOUR_TEXT_REGION 6 21 24 21 50
HELIX 88 21 98
COLOUR_TEXT_REGION 88 21 98 21 50
STRAND 30 26 34
COLOUR_TEXT_REGION 30 26 34 26 51
STRAND 40 26 49
COLOUR_TEXT_REGION 40 26 49 26 51
STRAND 52 26 57
COLOUR_TEXT_REGION 52 26 57 26 51
STRAND 61 26 62
COLOUR_TEXT_REGION 61 26 62 26 51
STRAND 68 26 69
COLOUR_TEXT_REGION 68 26 69 26 51
STRAND 75 26 79
COLOUR_TEXT_REGION 75 26 79 26 51
HELIX 6 26 23
COLOUR_TEXT_REGION 6 26 23 26 50
HELIX 86 26 98
COLOUR_TEXT_REGION 86 26 98 26 50
STRAND 31 27 34
COLOUR_TEXT_REGION 31 27 34 27 51
STRAND 40 27 48
COLOUR_TEXT_REGION 40 27 48 27 51
STRAND 52 27 57
COLOUR_TEXT_REGION 52 27 57 27 51
STRAND 67 27 70
COLOUR_TEXT_REGION 67 27 70 27 51
STRAND 75 27 79
COLOUR_TEXT_REGION 75 27 79 27 51
HELIX 6 27 14
COLOUR_TEXT_REGION 6 27 14 27 50
HELIX 16 27 24
COLOUR_TEXT_REGION 16 27 24 27 50
HELIX 89 27 98
COLOUR_TEXT_REGION 89 27 98 27 50