QUERY                  : MEFAPRSVVIEEFIDTLEPMMEAYGLDQVGIFEEHGEGNRYYVGYTINKDDEMITIHMPFVKNERGELALEKQEWTVRKDGREKKGFHSLQEAMEEVIHS : QUERY 
UniRef90_W7LDA8        : MEFLPREQVISSLQEPFHSYLDKYGIDDIGVFEEEGQDQHCYLGYTVKKAGKTYHVHSPFLKDGNGGLTPAKNEWTIESDEPDKRGFTSIEQALQEL--- : UniRef90_W7LDA8
UniRef90_E3IB20        : MEFAPRSVIINEFIDTLQPLMDVYQLDQVGIFEEEGEGNKYYIGYTINKDDDMIVLHMPFVKNERGELALEKQEWTIRKDGREQKGYYLLQEAMDEITN- : UniRef90_E3IB20
UniRef90_UPI0004789485 : MEFLPREQIINALQEPLQSYIDKYGIDDIGIFEEEGQGNQYYLGYTVKKEGRTYHIHSPYFKDDNGGLTPAENEWTIESDGEDRMGYENLEQALREI--- : UniRef90_UPI0004789485
UniRef90_A0A024PFA3    : MESVPVEQLISDLENSFRPLMEKNNLDDIGIFEEEGQGDYYHLGYTVKKNERVYMVHLPFIKSEDGHLTLDKQEWIVETDDPDLKGFDKIDDVFQSL--- : UniRef90_A0A024PFA3
UniRef90_A6CML9        : MAFLSREQLINELQTSFPSLMEEYGLEEIGVFEEEGQKDQYYLGYTVKKDGKAYMIHLPYKKDHDGGLEPSSQQWTIESDDPDHTGFDSMESALRGI--- : UniRef90_A6CML9
UniRef90_UPI0004787191 : MKYSNRDEVINDLQKAFQPLISKYDIEDIGVFEEQGQKDQYHMGYTIRKDGKTFMVHTPYLKNESGQLLAANNEWTVETDEPDVNGYKGLDEALRSL--- : UniRef90_UPI0004787191
UniRef90_UPI0002D431DA : MDYLSREQIMNELQQSFQPYLNMYGIENIGIFEEEGQDDCYYLGYTTRKDGETHHIHLPFQKNNDGGLAPINSKWTVESDNPDLKEFEDLDHVFREI--- : UniRef90_UPI0002D431DA
UniRef90_U5L8D2        : MESMTREQILADLQRSFEGYLNEYGADSIGTYEEPGQGGRYYFGCTVKKDDRTFHIHTPFAQQEDGRFTALGNGWTAETDDPDKRGYGDLESALKEI--- : UniRef90_U5L8D2
UniRef90_D5DC61        : MEYVGREAIVSELTHHMDDILNKYNLQGVSVYEEEGEGNHYYLGYTVKKNDYVFMVNKPYIKDKDGKLAVEKQEWTLQGNDGETNGYASLEDAFQQI--- : UniRef90_D5DC61
UniRef90_UPI00047E4596 : MESVTRETILQEMNDSLERIMNKYDVDDIGIFEEQGEAEEYYIGYTIRKADAVFMVHRPFYKDEQGLLAPHEKKWTVEEDGEDFHGFSSLDEAMDNVSN- : UniRef90_UPI00047E4596
UniRef90_UPI00047C98A2 : ---VTIDQIRGDLQDSFDTLMERYNIDDIGTFEEEGPEDEYYIGYTVRKNGRVYMVHMPFTKTGEGQLELARQEWTVETDDPTDKGFTTIDAVFEQL--- : UniRef90_UPI00047C98A2
UniRef90_UPI0002FD221C : MEYITRSNLIEGLQEPFQQYLEQFELDEIGIYEEDGQDDITHMGYTVTKNGQTYHLHTSFRKNEQERLTPLNNLWTLERDEPDRTGYRDLESIFREI--- : UniRef90_UPI0002FD221C
UniRef90_UPI00031DAE9A : ------------LANNLKQIQQQHQFEHLTIYEKNIENEILHLGYEIKRKQTTFRIYLRYLKLEQQSLLPFTPVWTIEDNHLTKRGYDSFLEALLSI--- : UniRef90_UPI00031DAE9A

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91-------- :
OrigSeq                : MEFAPRSVVIEEFIDTLEPMMEAYGLDQVGIFEEHGEGNRYYVGYTINKDDEMITIHMPFVKNERGELALEKQEWTVRKDGREKKGFHSLQEAMEEVIHS : OrigSeq

Jnet                   : -----HHHHHHHHHHHHHHHHHHH-----EEEEE-----EEEEEEEEE---EEEEEE---EE-----EEE----EEEEE--------HHHHHHHHHHH-- : Jnet
jhmm                   : -----HHHHHHHHHHHHHHHHHH------EEEEE-----EEEEEEEEEE--EEEEEE---EE-----EE-----EEEEE------HHHHHHHHHHHHH-- : jhmm
jpssm                  : -----HHHHHHHHH-HHHHHHHHH------EEEE-----EEEEEEEEE---EEEEEE---------EEEE----EEEEE---------HHHHHHHHHH-- : jpssm

Lupas 14               : ---------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ---------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ---------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---B-B--BB--B---B--BB--B-B--B-BB---B---BBBBBBBB-----BBBBBB-BB------B------BBB---------B--B--BB--B--- : Jnet_25
Jnet_5                 : --------B---B---B--B----------------------B---B-----BB-B--------------------B------------B--BB--B--- : Jnet_5
Jnet_0                 : --------B------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel               : 9997278999998530289998811688701562478845889999861865899843660156651550478558884377776223089999987459 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.