QUERY           : MLYINSFLDRMGEIIRGEKSVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTYVVSQLSIHFERLKEFAESKGEKKLDPEVINEIALYIDRVEKEV : QUERY 
UniRef90_N0BJR6 : MEYINSYLDRLREFLVN-KDQKMADQLISEAKIEKMFIDDVKNVYEKYRKNEIAEVDAKKNLDLLKVFVVTQLN---NKRKDVMESVGKQPIDGEVVKRIVEFIDAIER-- : UniRef90_N0BJR6
UniRef90_F2KTB1 : LSYRNTYLEKVGELMKYAKTVDEAKDLRDPERVAEIFRMDSEYIVHVFMAGGMTEEEAEDCLKKLKVYALSQLQEHYNLVIQLLKDTEKK--------------------- : UniRef90_F2KTB1
UniRef90_D2RDF9 : MMYKNTYLEKMGELLKHVMDVKAVKELTDDENIKEMFRSDVEFVMDKFYGGDITVEEALNNLSMLKIYAISQLDTH----------------------------------- : UniRef90_D2RDF9

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101------- :
OrigSeq         : MLYINSFLDRMGEIIRGEKSVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTYVVSQLSIHFERLKEFAESKGEKKLDPEVINEIALYIDRVEKEV : OrigSeq

Jnet            : ---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--- : Jnet
jhmm            : ---HHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--- : jhmm
jpssm           : --HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : --------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --B-B-BB--BB-BB--B--B--B--B-----B--BB---B--BB-BB----B----B--BB-BB-BBBBBBB--BB--B--BB-------B---BB--BB-BB--B---- : Jnet_25
Jnet_5          : -------B--B--BB--------B--------B---B---B--BB--B---------B------B-B-BB--B---------B------------BB--B---B------- : Jnet_5
Jnet_0          : -------------------------------------------B-------------B--------B-----B--------------------------B----------- : Jnet_0
Jnet Rel        : 971899999999998842129999871466899999864348999986168851678874488999988633101799999999752788773789999999999875349 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.