SILENT_MODE
BLOCK_FILE jp_Z99eiI7.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_Z99eiI7.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 166 38   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 39 166 48 H SPACE
SUB_CHARS 1 39 166 48 E SPACE
SUB_CHARS 1 39 166 48 - SPACE
STRAND 19 42 24
COLOUR_TEXT_REGION 19 42 24 42 51
STRAND 29 42 33
COLOUR_TEXT_REGION 29 42 33 42 51
STRAND 53 42 55
COLOUR_TEXT_REGION 53 42 55 42 51
STRAND 61 42 65
COLOUR_TEXT_REGION 61 42 65 42 51
STRAND 70 42 80
COLOUR_TEXT_REGION 70 42 80 42 51
STRAND 85 42 88
COLOUR_TEXT_REGION 85 42 88 42 51
STRAND 104 42 109
COLOUR_TEXT_REGION 104 42 109 42 51
STRAND 114 42 118
COLOUR_TEXT_REGION 114 42 118 42 51
STRAND 132 42 135
COLOUR_TEXT_REGION 132 42 135 42 51
STRAND 138 42 142
COLOUR_TEXT_REGION 138 42 142 42 51
HELIX 45 42 46
COLOUR_TEXT_REGION 45 42 46 42 50
STRAND 20 47 23
COLOUR_TEXT_REGION 20 47 23 47 51
STRAND 29 47 32
COLOUR_TEXT_REGION 29 47 32 47 51
STRAND 41 47 42
COLOUR_TEXT_REGION 41 47 42 47 51
STRAND 53 47 55
COLOUR_TEXT_REGION 53 47 55 47 51
STRAND 61 47 65
COLOUR_TEXT_REGION 61 47 65 47 51
STRAND 70 47 80
COLOUR_TEXT_REGION 70 47 80 47 51
STRAND 86 47 88
COLOUR_TEXT_REGION 86 47 88 47 51
STRAND 105 47 109
COLOUR_TEXT_REGION 105 47 109 47 51
STRAND 114 47 118
COLOUR_TEXT_REGION 114 47 118 47 51
STRAND 132 47 135
COLOUR_TEXT_REGION 132 47 135 47 51
STRAND 138 47 142
COLOUR_TEXT_REGION 138 47 142 47 51
HELIX 158 47 160
COLOUR_TEXT_REGION 158 47 160 47 50
STRAND 18 48 24
COLOUR_TEXT_REGION 18 48 24 48 51
STRAND 29 48 33
COLOUR_TEXT_REGION 29 48 33 48 51
STRAND 54 48 54
COLOUR_TEXT_REGION 54 48 54 48 51
STRAND 61 48 66
COLOUR_TEXT_REGION 61 48 66 48 51
STRAND 70 48 80
COLOUR_TEXT_REGION 70 48 80 48 51
STRAND 85 48 88
COLOUR_TEXT_REGION 85 48 88 48 51
STRAND 104 48 110
COLOUR_TEXT_REGION 104 48 110 48 51
STRAND 115 48 118
COLOUR_TEXT_REGION 115 48 118 48 51
STRAND 133 48 142
COLOUR_TEXT_REGION 133 48 142 48 51
HELIX 8 48 11
COLOUR_TEXT_REGION 8 48 11 48 50
HELIX 42 48 53
COLOUR_TEXT_REGION 42 48 53 48 50