QUERY : VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDI : QUERY
UniRef90_J1J188 : ----------------------------------------------------------STPFLVASGKKQLQLKKGTHITLSLAIASYSSDTVISISSLSAGKDYYVYLVPDGKLVLSENATFPHGYTATNSRKIGGFHTLCADVGTISGHPLSAGDILPQSVW-- : UniRef90_J1J188
UniRef90_J0RA81 : ---------------------------------------------------------ISTPFLVATGKAQLTVKKGTYLTLDILVVSYTADARISMPPLSAGKDYYLYLVPEGKIVGSENSTYPSGYSVNNSRKIGGFHTLCADVGTISGHPLSAGDILPNSVW-- : UniRef90_J0RA81
UniRef90_J0YQV2 : ----------------------------------------------------------STPFLVATGKKQLTLKKGTHISLNKRVVSYMNDTPIPMSQLSGGNDYYIYLVTSAQFIVSLNATYPTGYTATNSRKIGGFHTLCADVGTIADHPLSAGDILPNSVW-- : UniRef90_J0YQV2
UniRef90_B3QCN5 : ----------------------------------------------DLPSGTFVKADRSSVAFVKTGAGSVSLKAGTLIGLSGALYSFASATAVQMPTLAAGTDYAIYLCNDGTLRADASFTAATGFTAAQCRQIGGFHYAPGGNAAARAGGDATPAINAYSLWDL : UniRef90_B3QCN5
UniRef90_C6AD76 : ---------------------------------------------------------ISTPFLVATGKKQLTLKKGTRITLNDTLVSYTADTRISVPSLSAGKDYYVYLVSDGKLVLSENSTYPRDYTVSNSRKIGGFHTLCADVGTISGHPLSAGDILPHSVW-- : UniRef90_C6AD76
UniRef90_K0MCE9 : --------SFDDRYLGAAADPTTDNDGNALLVGANSTAGAWDGAAWQVPAGLFYKTDPTTVAFTKTGAGTASIKAGTKVDVAGTTVTFVAATAITMPALTAGTDYAIWVKDDATIQATTNFSTAPG--AGNWRKVGGFHYAPGGNAAAVAGGDTTPAINAYSFWDL : UniRef90_K0MCE9
UniRef90_J0Q389 : ----------------------------------------------------------TTPFLVATGKKQLTLKKGTHISLALAIASYTQDKNITISQLTAGKDYYIYLVSTDAFIISNNSTYPAGYTAMNSRKIGGFHTLCADVGTIADHPLSAGDILPNSVW-- : UniRef90_J0Q389
UniRef90_R5GH40 : ----------------------------RLLVDDVTKTDARALLNVNKMATISDIVAPSNEYIYASGANELTVVEGCVIAVGGAGIFKTANTILTAANLDAGKDYYVYICDDEKYVISLNSTYPTGWNATNSRKIGGFHYGRCRKVDSNLQPLNGSSVIFGTGWE- : UniRef90_R5GH40
UniRef90_J1JLZ9 : ----------------------------------------------------------STPFLVAAGKNQLKLKEGTHLALKLAVVSYTEDYTITVPSLAAGKDYYVYLAFDTKFVVSENSTYPDEYTLDTSKKIGGFHTLCADVGSIKDHPLSAGDILPDSVW-- : UniRef90_J1JLZ9
UniRef90_H7BV78 : -------------------------------------------AKITVAKMAIVAPEKEYIQYSAQGA--VTIMAGCVIAVGENAVFKTAETVLTKANLDHGSDYYIYICDPGTDAISLNSSWPDGWDDTNTRKIGGFHYGRVRNTDDYGRAVNASGSVRGSGWE- : UniRef90_H7BV78
UniRef90_J1KKI3 : ----------------------------------------------------LTAISPSTPFLIANNRQQLTLKKGTYIPLGNRVLDYTSDQKITIPSLVRGKDYYVYLVLEGKLVVSPNSTFPSGYTANNSRKIGGFHTLCADVGVIGGHPLSTGEILPNSVW-- : UniRef90_J1KKI3
UniRef90_D6E598 : -------------------------------------------AKITVAKMAIVASEKAFIQYSAAG--QLTVLAGAVIAVGDAIFTLSAANLDGASSFAHGKDYYIYLCDNGKDSISENSTFPDGWDDTNTRKIGGFHYGFVRNVDEYGREVNTSGSVRGSGWE- : UniRef90_D6E598
UniRef90_B0NAR6 : -------------------------------------------ARITTAKLAAISVAQKAQYITATGSAEVTVEAGVIISVGPSIFELTAANLDTGTGFEAGSDYYIYCCDDEIFVISKNTTYPSGYTAENSRKVGGFHYGIVRNVNSKGNPISSAGTENGSGWE- : UniRef90_B0NAR6
UniRef90_F9AA77 : ---------------------------------------------RSLSANAFHKSQTSEPAFLIAGGQLRTATALT-IRVGDSLITHAANEVISTPTLLVGVDYAIYTTPDG-LVVSNNFTVPDGYTAENSRRIGGFHYG------------------------- : UniRef90_F9AA77
UniRef90_H7BUU8 : -----------------------------------------DIAKITTPKLALVASDKK---FIRMENGSLTVIAGVLIAV-GNSVFKTEKTTLTASNLDVGKDYCIYICDPTQYRISLNTTYPNGYTAVTSRKIGGFHYGVVRKTNSSGIPISASGAALGSGWE- : UniRef90_H7BUU8
UniRef90_UPI000374D49B : ----------------------------------------------------------------------------------------MNDTPIPMSQLSGGNDYYIYLVTSAQFVVSLNATYPTGYTATNSRKIGGFHTLCADVGTIADHPLSAGDILPNSVW-- : UniRef90_UPI000374D49B
UniRef90_UPI0003B43D5B : ----------------------------------------------------FEKSISNDPAFSNVVNV-VSLACDVDVDISGVTCNFASGVNITMPALTVGTDYAIYAT-ETELIASANFTVPDGYTAQNSRRIGGFHYGDNR-------------IYPRSFWDL : UniRef90_UPI0003B43D5B
UniRef90_A9ITY7 : ------------------------------------------------------------------------IKGGVIFRGGEHGGKYTTNILITMP-LEAGKDYYIYFHNEIKLDISENPTAPDGYTEHNSLKIGGFHTLCADVGEIEDHPLSAGDILPDSVW-- : UniRef90_A9ITY7
UniRef90_B9TE92 : VRWRRGTAAQHASFTGALAEVTVNTDKKALHVHDGSTAGG----NRTLMASELGAANGVASLDAAGKIITSQISGAVVLS---ATPQMSAPPTITTAQLDQN---------------------------------------------------------------- : UniRef90_B9TE92
UniRef90_J2VZS6 : -----------------------------------------ATAKIEDATPLLAKIDPAAPVLKVEGLGRLQIKAGTFFNGGG----FSADTEVKITSLEPGTDYVVRISGDGPVRGDDPF-------------IGGFHFAPGGNAEARKGGDTVPAINPYSLWD- : UniRef90_J2VZS6
UniRef90_UPI0003B2FD1B : --------------------------------------------------------------------------------------DPTANDDGTVTALALGDDVYIYAVQDSSLVASKNATYPDGYTADNSRKLGGFHYGRVRPLSDRYSAGATVQIVPNSVWDL : UniRef90_UPI0003B2FD1B
UniRef90_UPI000306047C : ---------------------------------------------------------------------TVVIKAGTVFNIPATGVVIDTDKVISQQALAPGNDYYVYLMPEVTFAIRNHLGYPPGFDSTSSLLIGGFHTLCADVGTIKDHPLSAGDILPDSVW-- : UniRef90_UPI000306047C
UniRef90_J0QXZ4 : ----------------------------------------------SLAHLTLIDIASSTPFLVANSKQQLTLKKGTHIILPLLVADYTSDQTITVPSLARGKDYYVYLVFEGKVVVSPNSTYPDGYTANNSRKIGG----------------------------- : UniRef90_J0QXZ4
UniRef90_I6R1H9 : --------------TPAVGVYWLKGVGTAAFLNVGTTPNDIPVSTLVSSRSALLKTDRNTVAFEVSG-ADVLASQDFSYSTDGSIFEILSGEVVTLPTLASASDYKIYGLSDGSLSAQLFDTARP----TGGVLIGGFHVY-----------HTTGGINPNSLWDI : UniRef90_I6R1H9
UniRef90_UPI00037B5BFD : IKHRRGDATQLAAFTPAAGEIVVDTTNNRAVVGDGSRAGGYPAARLDESGVGFRNRLRNAAFSINQRGGTVTLSAGAYVKAGAAGCSYTFATSGIDTTITVAS--------------------------------------------------------------- : UniRef90_UPI00037B5BFD
UniRef90_F4YCR9 : --------------AGATPGATPGGSDTQVQFNDGGSFGGFDGFRLFASAIGYFNRRPVGPLFYKTGATTISITAGSVL----NGAVYSTATAVTMPGFTNNIDYAIWQHPTGALVADASFTAPAG--ATGGSIVGGFHYIPSGRPTAFDNGSPTGEILEFSLWDL : UniRef90_F4YCR9
UniRef90_G8CLA7 : -----------------------------------------------------------GPLFYKTAATTISVTAGSVL----NGVVYDLATAVTMPGFNNNTDYAIWQHPTGALVADASFTAPAG--AAGGSIVGGFHYIPSGRPTASGSPTATAEILEYSIWDL : UniRef90_G8CLA7
UniRef90_B8GRZ6 : -----------------------------------------------------------------------------------------ANQDGSLDNLALGDDVYLYAVQQANLVASKNITVPDGYGPDESRRIGGFHYGRWRPLSERYNADPSVIVMPTSVWDL : UniRef90_B8GRZ6
UniRef90_UPI00037B56EF : --------------------------------------------------------------------------------------DPTANEDGTGGSLSLGDDVYLYAVADATLVASKNITVPDGHTAETTRRIGGFHVGRHRPLAERYSTTFNPPIVPNSVWD- : UniRef90_UPI00037B56EF
UniRef90_A4JMM5 : LKLRRGNSAQTGAFTGALSEVTHNTDDGTLHVHDGSTPGGIIVLNQRLLQWAYA---QSFCLVSATRDANEAIVTASIVWPDGATGTFTTDSASTA---------------------------------------------------------------------- : UniRef90_A4JMM5
UniRef90_UPI00036654FA : LQHLREAFSFLSTFVGRVGEITVDTTNNRIQVHDGVTAGGWPTAKLSEVRTAVADANYTALVSDRT-IAYSAITAARIVTL-PAANAYPAGTALTV---------------------------------------------------------------------- : UniRef90_UPI00036654FA
UniRef90_UPI000382B593 : -------------------------------------------------------------------------------SGDATGWNPESEDDGTVGSLALGDDIYIYW-ADGQLVASRNDDGPDG--ATDWLMLGGFHYGRVRPFSEAYNASFTCEIIPNAVWD- : UniRef90_UPI000382B593
UniRef90_M1HLS3 : LQLRRGSTSQNNSFTGAVGEVSVDTDKDTLRVHDGSTAGGFEVATQTLTNKTLTSPNISGASFT---GASFTFEGATSFETTLTVVDPTADRTVTIPNATVGTDVS------------------------------------------------------------ : UniRef90_M1HLS3
UniRef90_B8EKU1 : VKSRRETASFLSTYVGATGELLVDTTSWRVQVHDGATPGGHSLALLSDPNLQNVSGLGVNASYDSINRVVVKIGAGVQFKVNKNGVSDTA---------------------------------------------------------------------------- : UniRef90_B8EKU1
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161--- :
OrigSeq : VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDI : OrigSeq
Jnet : ------------------EEEEEE----EEEEE-----------HH------EEE-----EEEEE----EEEEEEEEEEE----EEEE---------------EEEEEE----EEEEE-------------EEEE--EEEEE------------------------ : Jnet
jhmm : -------------------EEEE-----EEEE--------EE----------EEE-----EEEEE----EEEEEEEEEEE-----EEE----------------EEEEE----EEEEE-------------EEEE--EEEEE---------------HHH------ : jhmm
jpssm : -------HHHH------EEEEEEE----EEEEE--------HHHHHHHHHHHHE------EEEEEE---EEEEEEEEEEE----EEEE---------------EEEEEEE----EEEE--------------EEEEEEEEEE------------------------ : jpssm
Lupas 14 : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ---B----B-B--BBBBBBBBBB-B---BBBBBBBBB--BBBBB-B-BB-BBB--B---BBBBBB---B-BBB-BBBBB-B---BB-BB----B----B--B-BBBBBBB--B-B-B---B-BB-BB----BBBBBBBBBBBB--B-B---BBBBB-BB--BBB-- : Jnet_25
Jnet_5 : --------------------B--------B-B---B-------B--------B-------BB----------B--BB-B------B------------B-----BBB-B-------B--------------B--BBBBBBB-B-----------BB-B-------- : Jnet_5
Jnet_0 : -----------------------------B---------------------------------------------------------------------------BB---------B------------------BB----------------------------- : Jnet_0
Jnet Rel : 9998752122226787412899825885689813778775101001011231210588860477616826899734899648842885367777666777774188997268815761467776667777701560078885367777667777765113677788 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.