SILENT_MODE BLOCK_FILE jp_JdBed1N.concise.blc MAX_NSEQ 1356 MAX_INPUT_LEN 1358 OUTPUT_FILE jp_JdBed1N.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 412 1345 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1346 412 1355 H SPACE SUB_CHARS 1 1346 412 1355 E SPACE SUB_CHARS 1 1346 412 1355 - SPACE STRAND 0 1349 4 COLOUR_TEXT_REGION 0 1349 4 1349 51 STRAND 25 1349 29 COLOUR_TEXT_REGION 25 1349 29 1349 51 STRAND 42 1349 46 COLOUR_TEXT_REGION 42 1349 46 1349 51 STRAND 77 1349 83 COLOUR_TEXT_REGION 77 1349 83 1349 51 STRAND 108 1349 113 COLOUR_TEXT_REGION 108 1349 113 1349 51 STRAND 119 1349 132 COLOUR_TEXT_REGION 119 1349 132 1349 51 STRAND 164 1349 166 COLOUR_TEXT_REGION 164 1349 166 1349 51 STRAND 192 1349 197 COLOUR_TEXT_REGION 192 1349 197 1349 51 STRAND 216 1349 218 COLOUR_TEXT_REGION 216 1349 218 1349 51 STRAND 247 1349 253 COLOUR_TEXT_REGION 247 1349 253 1349 51 STRAND 272 1349 274 COLOUR_TEXT_REGION 272 1349 274 1349 51 STRAND 304 1349 308 COLOUR_TEXT_REGION 304 1349 308 1349 51 STRAND 348 1349 351 COLOUR_TEXT_REGION 348 1349 351 1349 51 STRAND 369 1349 371 COLOUR_TEXT_REGION 369 1349 371 1349 51 STRAND 380 1349 384 COLOUR_TEXT_REGION 380 1349 384 1349 51 STRAND 389 1349 394 COLOUR_TEXT_REGION 389 1349 394 1349 51 HELIX 11 1349 20 COLOUR_TEXT_REGION 11 1349 20 1349 50 HELIX 54 1349 70 COLOUR_TEXT_REGION 54 1349 70 1349 50 HELIX 93 1349 102 COLOUR_TEXT_REGION 93 1349 102 1349 50 HELIX 150 1349 158 COLOUR_TEXT_REGION 150 1349 158 1349 50 HELIX 168 1349 171 COLOUR_TEXT_REGION 168 1349 171 1349 50 HELIX 175 1349 187 COLOUR_TEXT_REGION 175 1349 187 1349 50 HELIX 200 1349 211 COLOUR_TEXT_REGION 200 1349 211 1349 50 HELIX 223 1349 230 COLOUR_TEXT_REGION 223 1349 230 1349 50 HELIX 254 1349 267 COLOUR_TEXT_REGION 254 1349 267 1349 50 HELIX 277 1349 279 COLOUR_TEXT_REGION 277 1349 279 1349 50 HELIX 284 1349 298 COLOUR_TEXT_REGION 284 1349 298 1349 50 HELIX 314 1349 319 COLOUR_TEXT_REGION 314 1349 319 1349 50 HELIX 323 1349 343 COLOUR_TEXT_REGION 323 1349 343 1349 50 HELIX 355 1349 364 COLOUR_TEXT_REGION 355 1349 364 1349 50 HELIX 401 1349 410 COLOUR_TEXT_REGION 401 1349 410 1349 50 STRAND 0 1354 4 COLOUR_TEXT_REGION 0 1354 4 1354 51 STRAND 25 1354 29 COLOUR_TEXT_REGION 25 1354 29 1354 51 STRAND 42 1354 46 COLOUR_TEXT_REGION 42 1354 46 1354 51 STRAND 77 1354 82 COLOUR_TEXT_REGION 77 1354 82 1354 51 STRAND 108 1354 112 COLOUR_TEXT_REGION 108 1354 112 1354 51 STRAND 119 1354 128 COLOUR_TEXT_REGION 119 1354 128 1354 51 STRAND 131 1354 132 COLOUR_TEXT_REGION 131 1354 132 1354 51 STRAND 163 1354 166 COLOUR_TEXT_REGION 163 1354 166 1354 51 STRAND 192 1354 197 COLOUR_TEXT_REGION 192 1354 197 1354 51 STRAND 216 1354 218 COLOUR_TEXT_REGION 216 1354 218 1354 51 STRAND 247 1354 253 COLOUR_TEXT_REGION 247 1354 253 1354 51 STRAND 272 1354 274 COLOUR_TEXT_REGION 272 1354 274 1354 51 STRAND 304 1354 307 COLOUR_TEXT_REGION 304 1354 307 1354 51 STRAND 348 1354 352 COLOUR_TEXT_REGION 348 1354 352 1354 51 STRAND 369 1354 371 COLOUR_TEXT_REGION 369 1354 371 1354 51 STRAND 380 1354 384 COLOUR_TEXT_REGION 380 1354 384 1354 51 STRAND 389 1354 394 COLOUR_TEXT_REGION 389 1354 394 1354 51 HELIX 11 1354 20 COLOUR_TEXT_REGION 11 1354 20 1354 50 HELIX 54 1354 70 COLOUR_TEXT_REGION 54 1354 70 1354 50 HELIX 92 1354 102 COLOUR_TEXT_REGION 92 1354 102 1354 50 HELIX 151 1354 158 COLOUR_TEXT_REGION 151 1354 158 1354 50 HELIX 170 1354 171 COLOUR_TEXT_REGION 170 1354 171 1354 50 HELIX 175 1354 187 COLOUR_TEXT_REGION 175 1354 187 1354 50 HELIX 200 1354 211 COLOUR_TEXT_REGION 200 1354 211 1354 50 HELIX 223 1354 230 COLOUR_TEXT_REGION 223 1354 230 1354 50 HELIX 255 1354 267 COLOUR_TEXT_REGION 255 1354 267 1354 50 HELIX 278 1354 279 COLOUR_TEXT_REGION 278 1354 279 1354 50 HELIX 285 1354 298 COLOUR_TEXT_REGION 285 1354 298 1354 50 HELIX 323 1354 342 COLOUR_TEXT_REGION 323 1354 342 1354 50 HELIX 355 1354 363 COLOUR_TEXT_REGION 355 1354 363 1354 50 HELIX 401 1354 410 COLOUR_TEXT_REGION 401 1354 410 1354 50 STRAND 0 1355 4 COLOUR_TEXT_REGION 0 1355 4 1355 51 STRAND 25 1355 29 COLOUR_TEXT_REGION 25 1355 29 1355 51 STRAND 42 1355 46 COLOUR_TEXT_REGION 42 1355 46 1355 51 STRAND 77 1355 84 COLOUR_TEXT_REGION 77 1355 84 1355 51 STRAND 108 1355 114 COLOUR_TEXT_REGION 108 1355 114 1355 51 STRAND 119 1355 132 COLOUR_TEXT_REGION 119 1355 132 1355 51 STRAND 165 1355 165 COLOUR_TEXT_REGION 165 1355 165 1355 51 STRAND 192 1355 196 COLOUR_TEXT_REGION 192 1355 196 1355 51 STRAND 216 1355 218 COLOUR_TEXT_REGION 216 1355 218 1355 51 STRAND 248 1355 252 COLOUR_TEXT_REGION 248 1355 252 1355 51 STRAND 272 1355 275 COLOUR_TEXT_REGION 272 1355 275 1355 51 STRAND 304 1355 308 COLOUR_TEXT_REGION 304 1355 308 1355 51 STRAND 348 1355 351 COLOUR_TEXT_REGION 348 1355 351 1355 51 STRAND 368 1355 371 COLOUR_TEXT_REGION 368 1355 371 1355 51 STRAND 379 1355 384 COLOUR_TEXT_REGION 379 1355 384 1355 51 STRAND 389 1355 394 COLOUR_TEXT_REGION 389 1355 394 1355 51 HELIX 10 1355 20 COLOUR_TEXT_REGION 10 1355 20 1355 50 HELIX 54 1355 71 COLOUR_TEXT_REGION 54 1355 71 1355 50 HELIX 94 1355 102 COLOUR_TEXT_REGION 94 1355 102 1355 50 HELIX 149 1355 158 COLOUR_TEXT_REGION 149 1355 158 1355 50 HELIX 166 1355 172 COLOUR_TEXT_REGION 166 1355 172 1355 50 HELIX 175 1355 187 COLOUR_TEXT_REGION 175 1355 187 1355 50 HELIX 200 1355 211 COLOUR_TEXT_REGION 200 1355 211 1355 50 HELIX 223 1355 230 COLOUR_TEXT_REGION 223 1355 230 1355 50 HELIX 253 1355 267 COLOUR_TEXT_REGION 253 1355 267 1355 50 HELIX 277 1355 279 COLOUR_TEXT_REGION 277 1355 279 1355 50 HELIX 283 1355 298 COLOUR_TEXT_REGION 283 1355 298 1355 50 HELIX 313 1355 320 COLOUR_TEXT_REGION 313 1355 320 1355 50 HELIX 323 1355 343 COLOUR_TEXT_REGION 323 1355 343 1355 50 HELIX 356 1355 364 COLOUR_TEXT_REGION 356 1355 364 1355 50 HELIX 401 1355 410 COLOUR_TEXT_REGION 401 1355 410 1355 50