QUERY                  : IEEELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKGGTD : QUERY 
UniRef90_W5Q6D2        : IEEELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELRRTLAKQKRGTD : UniRef90_W5Q6D2
UniRef90_W5Q6D2        : -DADPLLQQIRNITSFIRQAKAAGRADEVRTLQENLRQ------------- : UniRef90_W5Q6D2
UniRef90_H0V0B2        : IEEDLLLQQINNIKAYIFDAKQYGRLDEVEVLTENLRELRCTLAKQKRGPE : UniRef90_H0V0B2
UniRef90_UPI00045DC41D : -------QQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKRTLAKQKGGTD : UniRef90_UPI00045DC41D
UniRef90_UPI00045DC41D : -DSDPLLQQIHNITSFIKQAKAAGRTDEMCTLQENLQQLQEEYDQQQ---- : UniRef90_UPI00045DC41D
UniRef90_UPI00032AE963 : -------QQIDNIKAYIFDAKQSGRLDEVEVLTQNLRELRRTLARQQGGP- : UniRef90_UPI00032AE963
UniRef90_Q4RJV3        : IEEELLLQQIDNIRAYIFDAKLSGRLDEVELLSQNLRELQLTLQEQK---- : UniRef90_Q4RJV3
UniRef90_S4R9X0        : IDPELLRQQIDNIRAFIFDAKHGGRSEEVAALTQNLRELQQAL-------- : UniRef90_S4R9X0
UniRef90_U1MR56        : -EIDPLQQQIFIIKGYLKEAAEDGRLDEVEILEGNLRDLQNELKVHGGG-- : UniRef90_U1MR56
UniRef90_V9KHH1        : ----LLRQQINNIRAYIFDAKQNGRMDEVELLTENLRELQIVLAEQK---- : UniRef90_V9KHH1
UniRef90_V9KHH1        : ---DPLLQQIENIKHFIQQAQQASRFDEICTLEENLRQLQTEYDDQQ---- : UniRef90_V9KHH1
UniRef90_W5MZD4        : IEEELLIQQIDNIRAYIFDAKQSGRADE----------------------- : UniRef90_W5MZD4
UniRef90_F1QYJ2        : IEEELLLQQIDNIRAYIFDAKLSGRSDE----------------------- : UniRef90_F1QYJ2
UniRef90_F1QYJ2        : -QDDPLLQQIENIESFLRQARSANRSDEVCMLEENLRQLQDEFDAQQ---- : UniRef90_F1QYJ2
UniRef90_A8Q0K3        : VEEEPLEEQIFIIKGYLKQAVEDSRLEEVEILERNLCDLEHEIEK------ : UniRef90_A8Q0K3
UniRef90_H9JB11        : ----PLLEQMNIIRGYIKEARQELRFEEVAILEANLKELKKEYKLQK---- : UniRef90_H9JB11
UniRef90_R7UZ67        : -ESDPMIQQMNIIRGYVKQAKQARKWDEVKMLEDNLKELQ----------- : UniRef90_R7UZ67
UniRef90_U6PAM6        : MEEEPLFEQRDIIKGYLAQAATAGRLEEVEMLERNLRDLEDEMLKMG---- : UniRef90_U6PAM6
UniRef90_A0A023EZH6    : --DDPLIEQMNIIRSYIKEAKVAHRYDEVTSLEENLHELKKEFWKKQQAQD : UniRef90_A0A023EZH6
UniRef90_E0VZT9        : ISDHPIIQQINIIKGYIKQAESANRFEEVTTLQQNLRDLEEEFWRQ----- : UniRef90_E0VZT9
UniRef90_X1YDW3        : ---DPLIDQINIVKGYIKQARDARRLEEVATLEQNLSELMQEFSRRQR--- : UniRef90_X1YDW3
UniRef90_D3TLH9        : ---DPLIEQINIIKGYIKQARQDMNFDVVETLETNLRELQKE--------- : UniRef90_D3TLH9
UniRef90_H9K7L8        : ---DPIIEQMSNLRAYIKQAKADCRYDEVATLESNLKELQSA--------- : UniRef90_H9K7L8
UniRef90_B0W9K8        : ---DPLIDQINIVKGYIRQAREAMRFEEVETLERNLSELQRRNAQEGGGP- : UniRef90_B0W9K8
UniRef90_B7QGJ1        : --QDPMVLQMGIIRGYIRQAREARRYDEVAILEANLKELKRE--------- : UniRef90_B7QGJ1
UniRef90_W4YHZ7        : LSDDPLIQQMNIISSYLNQAQEAGRWDEVNMLEANLKDLQLAYRQEQAG-- : UniRef90_W4YHZ7
UniRef90_A0A023FX45    : -EEDPLAQQMAIIRGYIQQAKQSQRYEELASLEANLLELKQEYLRRTLGS- : UniRef90_A0A023FX45
UniRef90_T2M5U1        : ---DPILQQIENLKSYIQQAKEAKKFDEIKTLEENLR-------------- : UniRef90_T2M5U1

                       : 1---------11--------21--------31--------41-------- :
OrigSeq                : IEEELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKGGTD : OrigSeq

Jnet                   : ----HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH------ : Jnet
jhmm                   : ----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH------ : jhmm
jpssm                  : ---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----- : jpssm

Lupas 14               : ----------------------------CCCCCCCCCCCCCC--------- : Lupas 14
Lupas 21               : ----------------------------ccccccccccccccccccccc-- : Lupas 21
Lupas 28               : --------------------------------------------------- : Lupas 28

Jnet_25                : ----BB--BB-BB-BBB--B-----B-BB-BB--BB--B---B-------- : Jnet_25
Jnet_5                 : ------------B---B-----------B--B---B--B------------ : Jnet_5
Jnet_0                 : --------------------------------------------------- : Jnet_0
Jnet Rel               : 992189999999999887313067742789999999999999987058999 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.