QUERY                  : MSYEKEFLKDFEDWVKTQIQVNQLAMATSQEVADERAKDAFIRYESKLDAYEFLLGKFDNYKNGKAFHDIPDE : QUERY 
UniRef90_E4L306        : MSFEKEFIKDFEAWVQTQIQVNQVAMATSQQVADERARDAFIRYESKLDAYQFLLGKFANYHNGKGFHDMPDD : UniRef90_E4L306
UniRef90_J3JQV1        : MSYEQEFLKDFETWVNTQVMVNEMAMQESQKVKDEHAADAYIRYESKLDAYKFIQGKFENYKNGKGFHEMPD- : UniRef90_J3JQV1
UniRef90_G5JSH0        : MTYEQEFLKDFEDWLNSQILVNQTAVKTSQDVWDERAKEAAIRYESRLDAYRYLQGKFANYHQGKSFHDLPDN : UniRef90_G5JSH0
UniRef90_F5ZK37        : MTYEEKFLRDFEEWVQTQIQVNQLAMTTSRQIADERAKDAFIRYESKLDAYQFLQGKFENYRHGKDFHDVPDD : UniRef90_F5ZK37
UniRef90_UPI00035CED4B : MSYEQEFLKDFEAWVETQIMVNEVALKEAQKIKDERAADAYIRYESKLDAYRFLQGKFANYHDGKGFHDLP-- : UniRef90_UPI00035CED4B
UniRef90_T1ZUC5        : MTYEQEFLKDFEAWVKTQVAINEMALQESQKVKDERAKEAAIRYESRLDAYQFLLGKFANYQEGKGFHDLPD- : UniRef90_T1ZUC5
UniRef90_A0A024DCG6    : MSYEQEFMKEFEAWVNTQIMINDMAHKESQKVQDERAKDAMIRYESRLDAYQFLLGKFENFKAGKGFHDLPE- : UniRef90_A0A024DCG6
UniRef90_UPI00036A3A65 : MSYEADFLKEFEAWVNTQVTVNEMAVKESQKLADDKAADAYIRYESKLDAYRFLQGKFANYHAGKGFHDLPEE : UniRef90_UPI00036A3A65
UniRef90_I7KJ36        : MTYEQEFMQEFEDWVATQIMVNEMAMNQSQEVADERAKDAIIRYESRMDAYKFLLGKFENYKAGKGFHDLPD- : UniRef90_I7KJ36
UniRef90_G5KD28        : MTYEQEFLHDFEEWINSQIMINNLAMEESRRIADERAADAYIRYESKLDAYQFIKGKFENYQAGKSFHDLPDN : UniRef90_G5KD28
UniRef90_UPI000475E12A : MAMAEQFLTDFEEWVRTQVMINDMAMVETKKVGDERAMDAYIRYESKLDAYNYILGKFSNYHQGKSFHDLPDN : UniRef90_UPI000475E12A
UniRef90_UPI000373F239 : MSYEKEFMQEFETWVKNQVMINEMAMDASKKIKDDRAADAYIRYESKLDAYRYLLGKFDNYHKGKGFHDMPDN : UniRef90_UPI000373F239
UniRef90_UPI000347B397 : MTYEEKFLEEFETWVNTQVLINELALKESQKVWDERAKEAAIRYESRLDAYQFLLGKFANYHDKKGFHDLPDE : UniRef90_UPI000347B397
UniRef90_UPI000370EE8B : MSREEQFLNDFKDWVNTQVIINEGAMKASQQVWEERAKDAAIRYESRLDAYRFLQGKFQNFEEGKGFHDIPDD : UniRef90_UPI000370EE8B
UniRef90_UPI00035E913E : MSYEKDFLKAFEDWVNSQVMINEMAMEESRRVQDERAADAYIRYESKLDAYRFIQAKFDNYRSGKAFHDLPD- : UniRef90_UPI00035E913E
UniRef90_T0TK71        : MTYEQEFLKDFEAWVVTQVKVNEKALAASKKIWDERARDASFRYEAKLDAYNFLIGKFTNYRAGKGFHDMPE- : UniRef90_T0TK71
UniRef90_UPI00037711C6 : MANEKEFLRDFEEWVRDQISLNQLAMTTSQKIAQENAKDAFIRYEAKLDAYQFLLGKFDNYHNGKSFHEVPED : UniRef90_UPI00037711C6
UniRef90_A2RNX9        : MTYEQNFLKDFQEWVDQQVQISELAMKAAEKIATEEAKEAAIRYESRLDAYQFLQGKFENYKNGKDFHDVPD- : UniRef90_A2RNX9
UniRef90_UPI00035DFF19 : MTYEQEFLKAFEEWLNTQITINDKAKKESEKIKDEQAKEAIIRYESRLDAYQFLQSKFSNYHQKKDFHDLPD- : UniRef90_UPI00035DFF19
UniRef90_Q3D5X4        : MSYEQEFLKDFEEWLQSQISINQMAMDSAKKVKDERAADAYNRYESKLDA----------------------- : UniRef90_Q3D5X4

                       : 1---------11--------21--------31--------41--------51--------61--------71- :
OrigSeq                : MSYEKEFLKDFEDWVKTQIQVNQLAMATSQEVADERAKDAFIRYESKLDAYEFLLGKFDNYKNGKAFHDIPDE : OrigSeq

Jnet                   : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHH----------- : Jnet
jhmm                   : ---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHH----------- : jhmm
jpssm                  : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----------- : jpssm

Lupas 14               : ------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ------BB--B--BB--BB-B---BB--B--B----B--BBB-B---B-BB-BB---B--B-----B--B--- : Jnet_25
Jnet_5                 : ----------B---B---B-B----------------------------B---B---B--------------- : Jnet_5
Jnet_0                 : ------------------------------------------------------------------------- : Jnet_0
Jnet Rel               : 9817999999999886357820099999999884899999998611107999998687664236777778889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.