SILENT_MODE
BLOCK_FILE jp_mu3DoMF.concise.blc
MAX_NSEQ 1017
MAX_INPUT_LEN 1019
OUTPUT_FILE jp_mu3DoMF.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 248 1006   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1007 248 1016 H SPACE
SUB_CHARS 1 1007 248 1016 E SPACE
SUB_CHARS 1 1007 248 1016 - SPACE
STRAND 2 1010 7
COLOUR_TEXT_REGION 2 1010 7 1010 51
STRAND 27 1010 30
COLOUR_TEXT_REGION 27 1010 30 1010 51
STRAND 41 1010 46
COLOUR_TEXT_REGION 41 1010 46 1010 51
STRAND 64 1010 69
COLOUR_TEXT_REGION 64 1010 69 1010 51
STRAND 112 1010 113
COLOUR_TEXT_REGION 112 1010 113 1010 51
STRAND 117 1010 119
COLOUR_TEXT_REGION 117 1010 119 1010 51
STRAND 127 1010 134
COLOUR_TEXT_REGION 127 1010 134 1010 51
STRAND 138 1010 143
COLOUR_TEXT_REGION 138 1010 143 1010 51
STRAND 146 1010 149
COLOUR_TEXT_REGION 146 1010 149 1010 51
STRAND 173 1010 178
COLOUR_TEXT_REGION 173 1010 178 1010 51
STRAND 189 1010 191
COLOUR_TEXT_REGION 189 1010 191 1010 51
STRAND 196 1010 201
COLOUR_TEXT_REGION 196 1010 201 1010 51
STRAND 204 1010 209
COLOUR_TEXT_REGION 204 1010 209 1010 51
STRAND 219 1010 225
COLOUR_TEXT_REGION 219 1010 225 1010 51
STRAND 228 1010 233
COLOUR_TEXT_REGION 228 1010 233 1010 51
HELIX 11 1010 22
COLOUR_TEXT_REGION 11 1010 22 1010 50
HELIX 50 1010 59
COLOUR_TEXT_REGION 50 1010 59 1010 50
HELIX 84 1010 93
COLOUR_TEXT_REGION 84 1010 93 1010 50
HELIX 96 1010 97
COLOUR_TEXT_REGION 96 1010 97 1010 50
HELIX 99 1010 105
COLOUR_TEXT_REGION 99 1010 105 1010 50
HELIX 156 1010 162
COLOUR_TEXT_REGION 156 1010 162 1010 50
HELIX 239 1010 246
COLOUR_TEXT_REGION 239 1010 246 1010 50
STRAND 2 1015 7
COLOUR_TEXT_REGION 2 1015 7 1015 51
STRAND 27 1015 30
COLOUR_TEXT_REGION 27 1015 30 1015 51
STRAND 42 1015 46
COLOUR_TEXT_REGION 42 1015 46 1015 51
STRAND 64 1015 69
COLOUR_TEXT_REGION 64 1015 69 1015 51
STRAND 112 1015 119
COLOUR_TEXT_REGION 112 1015 119 1015 51
STRAND 127 1015 134
COLOUR_TEXT_REGION 127 1015 134 1015 51
STRAND 138 1015 143
COLOUR_TEXT_REGION 138 1015 143 1015 51
STRAND 146 1015 150
COLOUR_TEXT_REGION 146 1015 150 1015 51
STRAND 173 1015 178
COLOUR_TEXT_REGION 173 1015 178 1015 51
STRAND 189 1015 191
COLOUR_TEXT_REGION 189 1015 191 1015 51
STRAND 196 1015 201
COLOUR_TEXT_REGION 196 1015 201 1015 51
STRAND 204 1015 209
COLOUR_TEXT_REGION 204 1015 209 1015 51
STRAND 219 1015 224
COLOUR_TEXT_REGION 219 1015 224 1015 51
STRAND 229 1015 233
COLOUR_TEXT_REGION 229 1015 233 1015 51
HELIX 11 1015 22
COLOUR_TEXT_REGION 11 1015 22 1015 50
HELIX 50 1015 59
COLOUR_TEXT_REGION 50 1015 59 1015 50
HELIX 84 1015 92
COLOUR_TEXT_REGION 84 1015 92 1015 50
HELIX 96 1015 103
COLOUR_TEXT_REGION 96 1015 103 1015 50
HELIX 156 1015 161
COLOUR_TEXT_REGION 156 1015 161 1015 50
HELIX 239 1015 246
COLOUR_TEXT_REGION 239 1015 246 1015 50
STRAND 2 1016 7
COLOUR_TEXT_REGION 2 1016 7 1016 51
STRAND 26 1016 30
COLOUR_TEXT_REGION 26 1016 30 1016 51
STRAND 41 1016 46
COLOUR_TEXT_REGION 41 1016 46 1016 51
STRAND 65 1016 69
COLOUR_TEXT_REGION 65 1016 69 1016 51
STRAND 118 1016 119
COLOUR_TEXT_REGION 118 1016 119 1016 51
STRAND 127 1016 134
COLOUR_TEXT_REGION 127 1016 134 1016 51
STRAND 138 1016 143
COLOUR_TEXT_REGION 138 1016 143 1016 51
STRAND 148 1016 148
COLOUR_TEXT_REGION 148 1016 148 1016 51
STRAND 173 1016 178
COLOUR_TEXT_REGION 173 1016 178 1016 51
STRAND 188 1016 191
COLOUR_TEXT_REGION 188 1016 191 1016 51
STRAND 196 1016 201
COLOUR_TEXT_REGION 196 1016 201 1016 51
STRAND 204 1016 208
COLOUR_TEXT_REGION 204 1016 208 1016 51
STRAND 213 1016 214
COLOUR_TEXT_REGION 213 1016 214 1016 51
STRAND 219 1016 225
COLOUR_TEXT_REGION 219 1016 225 1016 51
STRAND 227 1016 233
COLOUR_TEXT_REGION 227 1016 233 1016 51
HELIX 11 1016 22
COLOUR_TEXT_REGION 11 1016 22 1016 50
HELIX 51 1016 59
COLOUR_TEXT_REGION 51 1016 59 1016 50
HELIX 84 1016 96
COLOUR_TEXT_REGION 84 1016 96 1016 50
HELIX 99 1016 110
COLOUR_TEXT_REGION 99 1016 110 1016 50
HELIX 156 1016 162
COLOUR_TEXT_REGION 156 1016 162 1016 50
HELIX 238 1016 245
COLOUR_TEXT_REGION 238 1016 245 1016 50