SILENT_MODE BLOCK_FILE jp_M9iMbkv.concise.blc MAX_NSEQ 883 MAX_INPUT_LEN 885 OUTPUT_FILE jp_M9iMbkv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 203 872 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 873 203 882 H SPACE SUB_CHARS 1 873 203 882 E SPACE SUB_CHARS 1 873 203 882 - SPACE STRAND 12 876 21 COLOUR_TEXT_REGION 12 876 21 876 51 STRAND 26 876 35 COLOUR_TEXT_REGION 26 876 35 876 51 STRAND 42 876 45 COLOUR_TEXT_REGION 42 876 45 876 51 STRAND 75 876 80 COLOUR_TEXT_REGION 75 876 80 876 51 STRAND 114 876 120 COLOUR_TEXT_REGION 114 876 120 876 51 STRAND 125 876 126 COLOUR_TEXT_REGION 125 876 126 876 51 STRAND 145 876 148 COLOUR_TEXT_REGION 145 876 148 876 51 STRAND 167 876 171 COLOUR_TEXT_REGION 167 876 171 876 51 HELIX 51 876 66 COLOUR_TEXT_REGION 51 876 66 876 50 HELIX 93 876 104 COLOUR_TEXT_REGION 93 876 104 876 50 HELIX 131 876 141 COLOUR_TEXT_REGION 131 876 141 876 50 HELIX 174 876 182 COLOUR_TEXT_REGION 174 876 182 876 50 STRAND 13 881 21 COLOUR_TEXT_REGION 13 881 21 881 51 STRAND 26 881 34 COLOUR_TEXT_REGION 26 881 34 881 51 STRAND 42 881 46 COLOUR_TEXT_REGION 42 881 46 881 51 STRAND 75 881 80 COLOUR_TEXT_REGION 75 881 80 881 51 STRAND 113 881 119 COLOUR_TEXT_REGION 113 881 119 881 51 STRAND 124 881 125 COLOUR_TEXT_REGION 124 881 125 881 51 STRAND 145 881 148 COLOUR_TEXT_REGION 145 881 148 881 51 STRAND 167 881 170 COLOUR_TEXT_REGION 167 881 170 881 51 HELIX 52 881 66 COLOUR_TEXT_REGION 52 881 66 881 50 HELIX 94 881 104 COLOUR_TEXT_REGION 94 881 104 881 50 HELIX 131 881 141 COLOUR_TEXT_REGION 131 881 141 881 50 HELIX 174 881 181 COLOUR_TEXT_REGION 174 881 181 881 50 STRAND 4 882 4 COLOUR_TEXT_REGION 4 882 4 882 51 STRAND 11 882 21 COLOUR_TEXT_REGION 11 882 21 882 51 STRAND 27 882 36 COLOUR_TEXT_REGION 27 882 36 882 51 STRAND 42 882 44 COLOUR_TEXT_REGION 42 882 44 882 51 STRAND 75 882 80 COLOUR_TEXT_REGION 75 882 80 882 51 STRAND 114 882 121 COLOUR_TEXT_REGION 114 882 121 882 51 STRAND 125 882 126 COLOUR_TEXT_REGION 125 882 126 882 51 STRAND 146 882 147 COLOUR_TEXT_REGION 146 882 147 882 51 STRAND 167 882 171 COLOUR_TEXT_REGION 167 882 171 882 51 HELIX 48 882 67 COLOUR_TEXT_REGION 48 882 67 882 50 HELIX 93 882 105 COLOUR_TEXT_REGION 93 882 105 882 50 HELIX 132 882 141 COLOUR_TEXT_REGION 132 882 141 882 50 HELIX 174 882 182 COLOUR_TEXT_REGION 174 882 182 882 50