QUERY                  : SAEKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQVLEGILPYLSELINKELMILL : QUERY 
UniRef90_N9U4U7        : SRAAQRELLWKIHHQGGEPAKAIGHQLFQPVTDKLIAHYSGRQLPVMAAIDLPELRALMSEFDPLPSRREKVLLNVMADIKAYLDELARRELMTLI : UniRef90_N9U4U7
UniRef90_U7QZP1        : -PATQRKIAWQWYQTSQPSQRAQLEKLIAPVQEHLWSQFGGLTLPVKPQLDLPELRAIIREFAPTGRQQETVLLKVLGEIKEYLSDLIRRELQTLI : UniRef90_U7QZP1
UniRef90_B6VK53        : -PTTQHKTLWQWYQTSQPSQRAQLERLTTPVQEHLWSQFGGLALPVKPSLDIPELRAIVREFAPTGRQQETVLLKVLGNIKPYLSDLIRRELQTLI : UniRef90_B6VK53
UniRef90_Q7N0U6        : -PATQRKVIWQWYQAKQPSQRAQLQKLIAPVQERLWSQFGGLAGNIKPPLDMPELRKIVREFAPTGRQQETVLLEVLGEIKPYLSDLIRQELKTLI : UniRef90_Q7N0U6
UniRef90_A4SUF4        : APAAKRELLWQIYQQGNKPAPEIGKQLFAPVTDKLIARFGERQSPVLDAIDLPELRATMREFDPLASRREKVLLNLLSELHLFLDALARRELMTLI : UniRef90_A4SUF4
UniRef90_Q699P6        : APSARRELLWQVYQQGDKRQAEIGKQLFEPVTNKLTERFGGRQLPVVAAIDQLELRALMREFDPLASRREAVLLDLLSKLKEFLDALARRELMTLI : UniRef90_Q699P6
UniRef90_UPI00046A8F3B : -RTQQRETVWKWYRQDLPESAELREWLMHGLSDRLLAHFPQQRGGLEP--DRLALKDLLKEQAPFGKQQETLLLNVLGEIKEYLSSLVRSELQTLI : UniRef90_UPI00046A8F3B
UniRef90_M7QMY9        : SPSEKKEALW--YAFSQERSAKGTDKLLASLEQELLGSFSGRLLA-EPPKDRQELKALLSEHFPLGAQKEQALWHSWAELKPVL-DMVRKELSFVI : UniRef90_M7QMY9
UniRef90_UPI0002F8616F : SPSEKKKALWYAFSQEQSADKASPE-LLALFKHELLGSFSGRLLAT-PPKDRRELKALLSEHFPLGAQKEQALWHCWGELKPVL-EVVRKELSFVI : UniRef90_UPI0002F8616F
UniRef90_W6DG65        : -PQTQKEALWYAFHQAKSADDAVPE-LLSVLKQELLGDFAG-QLMAEPPTDRAALKAMLAQSFPLGAQKEQALWHCWAELKSLPEDLVREELSFVI : UniRef90_W6DG65

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91---- :
OrigSeq                : SAEKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQVLEGILPYLSELINKELMILL : OrigSeq

Jnet                   : --HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm                   : --HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH--- : jhmm
jpssm                  : --HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14               : ------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25                : -----B-BBB-BB---------BB--BB-BB---BB--B----B-B-B-B-B--B--BB--BB-BB--BB-BBB-BB--B--BB--BB--BB--B- : Jnet_25
Jnet_5                 : --------BB----------------B---B---B-------------------B---B------------BBB--B--B---B--BB---B---- : Jnet_5
Jnet_0                 : --------BB--------------------------------------------------------------B----------------------- : Jnet_0
Jnet Rel               : 975899799998611887468999999875899999852677777665443389999998615886368999999987479999999999887079 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.