SILENT_MODE
BLOCK_FILE jp_5mf5Ugr.concise.blc
MAX_NSEQ 747
MAX_INPUT_LEN 749
OUTPUT_FILE jp_5mf5Ugr.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 147 736   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 737 147 746 H SPACE
SUB_CHARS 1 737 147 746 E SPACE
SUB_CHARS 1 737 147 746 - SPACE
STRAND 21 740 25
COLOUR_TEXT_REGION 21 740 25 740 51
STRAND 32 740 38
COLOUR_TEXT_REGION 32 740 38 740 51
STRAND 49 740 55
COLOUR_TEXT_REGION 49 740 55 740 51
STRAND 67 740 69
COLOUR_TEXT_REGION 67 740 69 740 51
STRAND 83 740 86
COLOUR_TEXT_REGION 83 740 86 740 51
HELIX 3 740 15
COLOUR_TEXT_REGION 3 740 15 740 50
HELIX 98 740 110
COLOUR_TEXT_REGION 98 740 110 740 50
HELIX 120 740 129
COLOUR_TEXT_REGION 120 740 129 740 50
HELIX 131 740 145
COLOUR_TEXT_REGION 131 740 145 740 50
STRAND 21 745 25
COLOUR_TEXT_REGION 21 745 25 745 51
STRAND 32 745 38
COLOUR_TEXT_REGION 32 745 38 745 51
STRAND 49 745 55
COLOUR_TEXT_REGION 49 745 55 745 51
STRAND 66 745 70
COLOUR_TEXT_REGION 66 745 70 745 51
STRAND 83 745 86
COLOUR_TEXT_REGION 83 745 86 745 51
HELIX 3 745 15
COLOUR_TEXT_REGION 3 745 15 745 50
HELIX 97 745 111
COLOUR_TEXT_REGION 97 745 111 745 50
HELIX 121 745 128
COLOUR_TEXT_REGION 121 745 128 745 50
HELIX 131 745 145
COLOUR_TEXT_REGION 131 745 145 745 50
STRAND 21 746 25
COLOUR_TEXT_REGION 21 746 25 746 51
STRAND 33 746 38
COLOUR_TEXT_REGION 33 746 38 746 51
STRAND 49 746 55
COLOUR_TEXT_REGION 49 746 55 746 51
STRAND 83 746 86
COLOUR_TEXT_REGION 83 746 86 746 51
HELIX 3 746 14
COLOUR_TEXT_REGION 3 746 14 746 50
HELIX 102 746 106
COLOUR_TEXT_REGION 102 746 106 746 50
HELIX 120 746 129
COLOUR_TEXT_REGION 120 746 129 746 50
HELIX 131 746 145
COLOUR_TEXT_REGION 131 746 145 746 50