SILENT_MODE BLOCK_FILE jp_lxLsYBv.concise.blc MAX_NSEQ 606 MAX_INPUT_LEN 608 OUTPUT_FILE jp_lxLsYBv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 148 595 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 596 148 605 H SPACE SUB_CHARS 1 596 148 605 E SPACE SUB_CHARS 1 596 148 605 - SPACE STRAND 125 599 127 COLOUR_TEXT_REGION 125 599 127 599 51 HELIX 11 599 21 COLOUR_TEXT_REGION 11 599 21 599 50 HELIX 23 599 38 COLOUR_TEXT_REGION 23 599 38 599 50 HELIX 52 599 52 COLOUR_TEXT_REGION 52 599 52 599 50 HELIX 58 599 70 COLOUR_TEXT_REGION 58 599 70 599 50 HELIX 79 599 99 COLOUR_TEXT_REGION 79 599 99 599 50 HELIX 133 599 146 COLOUR_TEXT_REGION 133 599 146 599 50 STRAND 4 604 5 COLOUR_TEXT_REGION 4 604 5 604 51 STRAND 101 604 102 COLOUR_TEXT_REGION 101 604 102 604 51 STRAND 126 604 128 COLOUR_TEXT_REGION 126 604 128 604 51 HELIX 11 604 20 COLOUR_TEXT_REGION 11 604 20 604 50 HELIX 23 604 38 COLOUR_TEXT_REGION 23 604 38 604 50 HELIX 50 604 54 COLOUR_TEXT_REGION 50 604 54 604 50 HELIX 58 604 71 COLOUR_TEXT_REGION 58 604 71 604 50 HELIX 79 604 87 COLOUR_TEXT_REGION 79 604 87 604 50 HELIX 91 604 99 COLOUR_TEXT_REGION 91 604 99 604 50 HELIX 133 604 146 COLOUR_TEXT_REGION 133 604 146 604 50 STRAND 76 605 77 COLOUR_TEXT_REGION 76 605 77 605 51 STRAND 123 605 125 COLOUR_TEXT_REGION 123 605 125 605 51 HELIX 11 605 21 COLOUR_TEXT_REGION 11 605 21 605 50 HELIX 23 605 38 COLOUR_TEXT_REGION 23 605 38 605 50 HELIX 58 605 70 COLOUR_TEXT_REGION 58 605 70 605 50 HELIX 78 605 100 COLOUR_TEXT_REGION 78 605 100 605 50 HELIX 133 605 141 COLOUR_TEXT_REGION 133 605 141 605 50 HELIX 144 605 146 COLOUR_TEXT_REGION 144 605 146 605 50