SILENT_MODE
BLOCK_FILE jp_9t3t6b6.concise.blc
MAX_NSEQ 367
MAX_INPUT_LEN 369
OUTPUT_FILE jp_9t3t6b6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 127 356   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 357 127 366 H SPACE
SUB_CHARS 1 357 127 366 E SPACE
SUB_CHARS 1 357 127 366 - SPACE
HELIX 2 360 10
COLOUR_TEXT_REGION 2 360 10 360 50
HELIX 15 360 25
COLOUR_TEXT_REGION 15 360 25 360 50
HELIX 30 360 39
COLOUR_TEXT_REGION 30 360 39 360 50
HELIX 42 360 48
COLOUR_TEXT_REGION 42 360 48 360 50
HELIX 61 360 66
COLOUR_TEXT_REGION 61 360 66 360 50
HELIX 71 360 79
COLOUR_TEXT_REGION 71 360 79 360 50
HELIX 84 360 101
COLOUR_TEXT_REGION 84 360 101 360 50
HELIX 113 360 124
COLOUR_TEXT_REGION 113 360 124 360 50
HELIX 2 365 9
COLOUR_TEXT_REGION 2 365 9 365 50
HELIX 15 365 24
COLOUR_TEXT_REGION 15 365 24 365 50
HELIX 30 365 39
COLOUR_TEXT_REGION 30 365 39 365 50
HELIX 42 365 48
COLOUR_TEXT_REGION 42 365 48 365 50
HELIX 61 365 66
COLOUR_TEXT_REGION 61 365 66 365 50
HELIX 71 365 79
COLOUR_TEXT_REGION 71 365 79 365 50
HELIX 84 365 101
COLOUR_TEXT_REGION 84 365 101 365 50
HELIX 114 365 124
COLOUR_TEXT_REGION 114 365 124 365 50
HELIX 2 366 10
COLOUR_TEXT_REGION 2 366 10 366 50
HELIX 16 366 26
COLOUR_TEXT_REGION 16 366 26 366 50
HELIX 30 366 39
COLOUR_TEXT_REGION 30 366 39 366 50
HELIX 42 366 48
COLOUR_TEXT_REGION 42 366 48 366 50
HELIX 61 366 67
COLOUR_TEXT_REGION 61 366 67 366 50
HELIX 71 366 79
COLOUR_TEXT_REGION 71 366 79 366 50
HELIX 84 366 101
COLOUR_TEXT_REGION 84 366 101 366 50
HELIX 113 366 124
COLOUR_TEXT_REGION 113 366 124 366 50