SILENT_MODE BLOCK_FILE jp_9t3t6b6.concise.blc MAX_NSEQ 367 MAX_INPUT_LEN 369 OUTPUT_FILE jp_9t3t6b6.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 127 356 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 357 127 366 H SPACE SUB_CHARS 1 357 127 366 E SPACE SUB_CHARS 1 357 127 366 - SPACE HELIX 2 360 10 COLOUR_TEXT_REGION 2 360 10 360 50 HELIX 15 360 25 COLOUR_TEXT_REGION 15 360 25 360 50 HELIX 30 360 39 COLOUR_TEXT_REGION 30 360 39 360 50 HELIX 42 360 48 COLOUR_TEXT_REGION 42 360 48 360 50 HELIX 61 360 66 COLOUR_TEXT_REGION 61 360 66 360 50 HELIX 71 360 79 COLOUR_TEXT_REGION 71 360 79 360 50 HELIX 84 360 101 COLOUR_TEXT_REGION 84 360 101 360 50 HELIX 113 360 124 COLOUR_TEXT_REGION 113 360 124 360 50 HELIX 2 365 9 COLOUR_TEXT_REGION 2 365 9 365 50 HELIX 15 365 24 COLOUR_TEXT_REGION 15 365 24 365 50 HELIX 30 365 39 COLOUR_TEXT_REGION 30 365 39 365 50 HELIX 42 365 48 COLOUR_TEXT_REGION 42 365 48 365 50 HELIX 61 365 66 COLOUR_TEXT_REGION 61 365 66 365 50 HELIX 71 365 79 COLOUR_TEXT_REGION 71 365 79 365 50 HELIX 84 365 101 COLOUR_TEXT_REGION 84 365 101 365 50 HELIX 114 365 124 COLOUR_TEXT_REGION 114 365 124 365 50 HELIX 2 366 10 COLOUR_TEXT_REGION 2 366 10 366 50 HELIX 16 366 26 COLOUR_TEXT_REGION 16 366 26 366 50 HELIX 30 366 39 COLOUR_TEXT_REGION 30 366 39 366 50 HELIX 42 366 48 COLOUR_TEXT_REGION 42 366 48 366 50 HELIX 61 366 67 COLOUR_TEXT_REGION 61 366 67 366 50 HELIX 71 366 79 COLOUR_TEXT_REGION 71 366 79 366 50 HELIX 84 366 101 COLOUR_TEXT_REGION 84 366 101 366 50 HELIX 113 366 124 COLOUR_TEXT_REGION 113 366 124 366 50