SILENT_MODE BLOCK_FILE jp_l942U5S.concise.blc MAX_NSEQ 407 MAX_INPUT_LEN 409 OUTPUT_FILE jp_l942U5S.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 110 396 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 397 110 406 H SPACE SUB_CHARS 1 397 110 406 E SPACE SUB_CHARS 1 397 110 406 - SPACE STRAND 5 400 8 COLOUR_TEXT_REGION 5 400 8 400 51 STRAND 13 400 18 COLOUR_TEXT_REGION 13 400 18 400 51 STRAND 24 400 28 COLOUR_TEXT_REGION 24 400 28 400 51 STRAND 68 400 71 COLOUR_TEXT_REGION 68 400 71 400 51 STRAND 82 400 85 COLOUR_TEXT_REGION 82 400 85 400 51 STRAND 96 400 102 COLOUR_TEXT_REGION 96 400 102 400 51 HELIX 34 400 44 COLOUR_TEXT_REGION 34 400 44 400 50 STRAND 5 405 8 COLOUR_TEXT_REGION 5 405 8 405 51 STRAND 13 405 18 COLOUR_TEXT_REGION 13 405 18 405 51 STRAND 24 405 28 COLOUR_TEXT_REGION 24 405 28 405 51 STRAND 52 405 55 COLOUR_TEXT_REGION 52 405 55 405 51 STRAND 68 405 71 COLOUR_TEXT_REGION 68 405 71 405 51 STRAND 82 405 85 COLOUR_TEXT_REGION 82 405 85 405 51 STRAND 96 405 102 COLOUR_TEXT_REGION 96 405 102 405 51 HELIX 34 405 44 COLOUR_TEXT_REGION 34 405 44 405 50 STRAND 5 406 7 COLOUR_TEXT_REGION 5 406 7 406 51 STRAND 12 406 18 COLOUR_TEXT_REGION 12 406 18 406 51 STRAND 24 406 28 COLOUR_TEXT_REGION 24 406 28 406 51 STRAND 68 406 71 COLOUR_TEXT_REGION 68 406 71 406 51 STRAND 83 406 84 COLOUR_TEXT_REGION 83 406 84 406 51 STRAND 96 406 101 COLOUR_TEXT_REGION 96 406 101 406 51 HELIX 34 406 43 COLOUR_TEXT_REGION 34 406 43 406 50