QUERY : ALLKANKDLISAGLKEFSVLLNQQVFNDALVSEEDMVTVVEDWMNFYINYYRQQVTGEPQERDKALQELRQELNTLANPFLAKYRDFLKS : QUERY
UniRef90_UPI0003C85B07 : ALLQTNKDLISAGIKEFKTLLNQQVFSDPLISEEAMETVANDWVNFYINYYRQQMVGEQQEQDRALQELRQELTTLAASFLDKYRNFLKS : UniRef90_UPI0003C85B07
UniRef90_UPI0002235AF5 : ALLQANKDLISTGMKEFSILLNQQDMRDNPIPEEAMVIVVNDWMSFYINYYRQKMTGEQQEQDRALQELQQGLNTLANPFLTKYRDFLKT : UniRef90_UPI0002235AF5
UniRef90_UPI00018B8EBA : -LIQANKDLISTGKKEFNVLLSQQVFGDPLISEEAMVIVVNDWINFYINYYKQKITGEQQEQDMALQELQQELNTLASPFLDKYRAFLKS : UniRef90_UPI00018B8EBA
UniRef90_L9KTP8 : ALLQVNKDIIATGMKKFSVLLDQQVFSEPPISEEAMVVVVNDWVNFYVNYYGQQVTGEQQEQDRALNELRQELTTMASPFLAKYRAFLKS : UniRef90_L9KTP8
UniRef90_H0XCX0 : ALLQANEDLISAGVKEFNILLNQQVFNEPFVSEEAMETVVNDWVNFYMNYYKKQMTGEQGEQEKALQELKQKLNSLANPFLAKYRAFLKS : UniRef90_H0XCX0
UniRef90_UPI000333A431 : ALLQANKDLISTGMKEFRVLLDQQVIGNKSVSEEDMATVVDDWVSFYINYYRPRMSGDPQEQDRALQELRRELNTLAHPFLEKYRAFLKS : UniRef90_UPI000333A431
UniRef90_UPI000441D92C : ALLQTNKDLIATGMKEFNILLNQQVFSGPVVPEEDMMTVVNDWVNFYISYYRQQMVGEQQEQDEAVQELRQQLDTLSASFLDKYRNFLRS : UniRef90_UPI000441D92C
UniRef90_UPI00033178B5 : --LQDNKDLISKGIKEFNILLDQQVFPDPPIPEEAMATIVDDWVNLYINYYKLQMTGEQQEQDQALQELRQELTTLSAPFVDKYKAFLKS : UniRef90_UPI00033178B5
UniRef90_I3LCF9 : ALLPTNQDLISAGIKEFNILLNQQVFSEPAIPEEAMVTVVNDWMDLYLNYYKKKMVGEQEEQDKALQELRQELNTLSASFLDKYRNFLKS : UniRef90_I3LCF9
UniRef90_UPI0003F168FD : ALLQTNKDLISTGIKEFGVLLNQQVMPDSPISEEDMATVVDDWVNMYTNYYKQKVTGEQEEKDRALQELRQELTAMANPFLAKYRLFLKS : UniRef90_UPI0003F168FD
UniRef90_I3NEY4 : AHLQSNKDLISSGMKEFNVLLNQQVFNDPLISEEDMVTVVDDWVNFYVNYYKQHMKGEQQEQVGALQELQQQLDILAKSFLVKYKDFLKS : UniRef90_I3NEY4
UniRef90_UPI000328EA12 : ALLQANKDLISKAMREFSILLNQQVSPEPPISEDAMAVIVDDWVNLYISHYRPKMTGEQQEQNRAVQELQQELTALANPFLIKYRAFLNT : UniRef90_UPI000328EA12
UniRef90_UPI0003599ECF : APFQTNEELISTGIKQFNVLLDQQVFSDPLIPEEGMVTVVDDWVNLYINYYKPLVLGGQQEQDKTLQELQQELKTLGSQFLTKYRTFLKS : UniRef90_UPI0003599ECF
UniRef90_UPI00032ADD14 : ALLPANKDLICTGKKEFNVLLNQQVLGDPFLSEEAMEIVLDDWVNLYANYYKPQLTGEQQEQDRALQELQRELKELAKPFLHKYRDFLKS : UniRef90_UPI00032ADD14
UniRef90_UPI000334541A : ALLQDNKDLISKAIKEFNTLLGQQIFPDPPIPEEAMETIAQDWVNFYVNYYRQQVTGEQQEQDMTLKELRQQLNILSTPFVAKYKAFLKT : UniRef90_UPI000334541A
UniRef90_UPI000332FD84 : -VFRTNKDLISRGVKEFNVLLSQQVFNEPLVSDEDMEIMVGDWVKLYLNYYRKHMTGEQQQQDSALQELQQELNTLSNHFLAKYRVFLES : UniRef90_UPI000332FD84
UniRef90_UPI000443A14A : AHLQTNKDLIAKGIKEFTALLDQQVFSHPFVSEEDMVVIVKDWMDLYTNYYTNQLTGECQEKDMALQELREGMLALSEPFLDKYREHIKS : UniRef90_UPI000443A14A
UniRef90_F7DP52 : --LQSNQDVISSAMQEFNKLLNQQDFTYAVISEKDMVTIVDDWMNYYLSFFSQKMSGDQQEQERAMQKLQEELRSSANPFLDKYRAFLKS : UniRef90_F7DP52
UniRef90_G1P6I0 : ALLPANKDLISTGMKEFNALLNQQVFSDPPVSEEAMVTMVNDWVNFYINYYKQQMTGEEQEQDRALEELRQELNTLSVPFLAKYRAFLKS : UniRef90_G1P6I0
UniRef90_G3WLQ8 : ALLQSNQDVISSAMQEFSKLLDQQEFTKPAFSETDMVTIVDDWIKFYLSYYSKKMTGNEQEQERAMQKLQEELRTSASPFLDK------- : UniRef90_G3WLQ8
UniRef90_F7EDV6 : -PLHSNQDVINSAMAAFQALLNQQVFSPQPIPMEAMKIIVRDWIEFYISYFAPKLRGDRQERERAQEDLWETLQAIARPFLDKYRDFLNA : UniRef90_F7EDV6
UniRef90_H0VUX5 : ALLQANKDLISVGMKEFNILLNQQVFDHPLIAEEDLVVIVNDWVNMYINYYRQRVTGEKQEQDRALQELQQELRTLANPFLARYRAFLKS : UniRef90_H0VUX5
UniRef90_F1MER2 : -----------------------QVFSDPAISEEAMVTVVNDWVSFYINYYKKQLSGEQDEQDKALQEFRQELNTLSASFLDKYRNFLKS : UniRef90_F1MER2
UniRef90_G1TJ87 : ALLPTNKDLISMGLKEFNVLLNQQVFSDPLLSQEAMQTVLDDWVNLYVNYYRQQMTGEQQELDKALEELRLELNGLAKPFLNKYSVFLKS : UniRef90_G1TJ87
UniRef90_UPI00045466B4 : --------------------------SHIVIPLEAMETIVNDWVAFYISFYSPRLSGDAAEQSQAQEELQGELRTSAEPFLAKYSAFLNS : UniRef90_UPI00045466B4
UniRef90_G5BYB6 : ALLQANKDLIALGMKEFSPASHPQVFNYPLITEEDMVVVVDDWVNIYINYYRKRLTGEKQDQDRALQELRQELKTLASPFLAKYRACLES : UniRef90_G5BYB6
: 1---------11--------21--------31--------41--------51--------61--------71--------81-------- :
OrigSeq : ALLKANKDLISAGLKEFSVLLNQQVFNDALVSEEDMVTVVEDWMNFYINYYRQQVTGEPQERDKALQELRQELNTLANPFLAKYRDFLKS : OrigSeq
Jnet : -----HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm : -----HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm : ------HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-- : jpssm
Lupas 14 : -----------------------------------------------------------------cccccccccccccc----------- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------ : Lupas 28
Jnet_25 : --B--B--BB--BB--B--BB--B-B---BB---BB-BBB-BBB-BBBBBB---B---------BB--B---B--BB--BB--B--BB-- : Jnet_25
Jnet_5 : --------BB--B---B------------------B--BB--BB-BBB--------------------B---B---B---B--B------ : Jnet_5
Jnet_0 : ------------------------------------------------------------------------------------------ : Jnet_0
Jnet Rel : 999872789999999986651467777777764235444543688787521325776368999999999999999875479999987289 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.