SILENT_MODE
BLOCK_FILE jp_iIbvWaE.concise.blc
MAX_NSEQ 985
MAX_INPUT_LEN 987
OUTPUT_FILE jp_iIbvWaE.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 240 974   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 975 240 984 H SPACE
SUB_CHARS 1 975 240 984 E SPACE
SUB_CHARS 1 975 240 984 - SPACE
STRAND 14 978 20
COLOUR_TEXT_REGION 14 978 20 978 51
STRAND 63 978 68
COLOUR_TEXT_REGION 63 978 68 978 51
STRAND 73 978 78
COLOUR_TEXT_REGION 73 978 78 978 51
STRAND 87 978 90
COLOUR_TEXT_REGION 87 978 90 978 51
STRAND 95 978 101
COLOUR_TEXT_REGION 95 978 101 978 51
STRAND 107 978 111
COLOUR_TEXT_REGION 107 978 111 978 51
STRAND 116 978 120
COLOUR_TEXT_REGION 116 978 120 978 51
STRAND 146 978 151
COLOUR_TEXT_REGION 146 978 151 978 51
STRAND 207 978 209
COLOUR_TEXT_REGION 207 978 209 978 51
HELIX 43 978 56
COLOUR_TEXT_REGION 43 978 56 978 50
HELIX 124 978 139
COLOUR_TEXT_REGION 124 978 139 978 50
HELIX 163 978 172
COLOUR_TEXT_REGION 163 978 172 978 50
HELIX 189 978 201
COLOUR_TEXT_REGION 189 978 201 978 50
HELIX 231 978 238
COLOUR_TEXT_REGION 231 978 238 978 50
STRAND 15 983 20
COLOUR_TEXT_REGION 15 983 20 983 51
STRAND 64 983 68
COLOUR_TEXT_REGION 64 983 68 983 51
STRAND 73 983 77
COLOUR_TEXT_REGION 73 983 77 983 51
STRAND 86 983 90
COLOUR_TEXT_REGION 86 983 90 983 51
STRAND 96 983 101
COLOUR_TEXT_REGION 96 983 101 983 51
STRAND 107 983 111
COLOUR_TEXT_REGION 107 983 111 983 51
STRAND 116 983 121
COLOUR_TEXT_REGION 116 983 121 983 51
STRAND 146 983 150
COLOUR_TEXT_REGION 146 983 150 983 51
STRAND 187 983 187
COLOUR_TEXT_REGION 187 983 187 983 51
STRAND 208 983 209
COLOUR_TEXT_REGION 208 983 209 983 51
HELIX 43 983 56
COLOUR_TEXT_REGION 43 983 56 983 50
HELIX 125 983 139
COLOUR_TEXT_REGION 125 983 139 983 50
HELIX 163 983 171
COLOUR_TEXT_REGION 163 983 171 983 50
HELIX 191 983 201
COLOUR_TEXT_REGION 191 983 201 983 50
HELIX 232 983 238
COLOUR_TEXT_REGION 232 983 238 983 50
STRAND 14 984 20
COLOUR_TEXT_REGION 14 984 20 984 51
STRAND 63 984 68
COLOUR_TEXT_REGION 63 984 68 984 51
STRAND 73 984 78
COLOUR_TEXT_REGION 73 984 78 984 51
STRAND 88 984 90
COLOUR_TEXT_REGION 88 984 90 984 51
STRAND 95 984 101
COLOUR_TEXT_REGION 95 984 101 984 51
STRAND 108 984 110
COLOUR_TEXT_REGION 108 984 110 984 51
STRAND 116 984 119
COLOUR_TEXT_REGION 116 984 119 984 51
STRAND 146 984 152
COLOUR_TEXT_REGION 146 984 152 984 51
STRAND 206 984 209
COLOUR_TEXT_REGION 206 984 209 984 51
STRAND 216 984 216
COLOUR_TEXT_REGION 216 984 216 984 51
HELIX 43 984 57
COLOUR_TEXT_REGION 43 984 57 984 50
HELIX 104 984 107
COLOUR_TEXT_REGION 104 984 107 984 50
HELIX 124 984 138
COLOUR_TEXT_REGION 124 984 138 984 50
HELIX 163 984 172
COLOUR_TEXT_REGION 163 984 172 984 50
HELIX 178 984 180
COLOUR_TEXT_REGION 178 984 180 984 50
HELIX 187 984 200
COLOUR_TEXT_REGION 187 984 200 984 50
HELIX 231 984 238
COLOUR_TEXT_REGION 231 984 238 984 50