SILENT_MODE BLOCK_FILE jp_pyZYvrK.concise.blc MAX_NSEQ 399 MAX_INPUT_LEN 401 OUTPUT_FILE jp_pyZYvrK.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 264 388 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 389 264 398 H SPACE SUB_CHARS 1 389 264 398 E SPACE SUB_CHARS 1 389 264 398 - SPACE STRAND 154 392 159 COLOUR_TEXT_REGION 154 392 159 392 51 STRAND 164 392 168 COLOUR_TEXT_REGION 164 392 168 392 51 STRAND 175 392 176 COLOUR_TEXT_REGION 175 392 176 392 51 STRAND 187 392 196 COLOUR_TEXT_REGION 187 392 196 392 51 STRAND 201 392 208 COLOUR_TEXT_REGION 201 392 208 392 51 STRAND 226 392 227 COLOUR_TEXT_REGION 226 392 227 392 51 STRAND 233 392 244 COLOUR_TEXT_REGION 233 392 244 392 51 STRAND 255 392 259 COLOUR_TEXT_REGION 255 392 259 392 51 HELIX 2 392 9 COLOUR_TEXT_REGION 2 392 9 392 50 HELIX 12 392 25 COLOUR_TEXT_REGION 12 392 25 392 50 HELIX 30 392 42 COLOUR_TEXT_REGION 30 392 42 392 50 HELIX 46 392 59 COLOUR_TEXT_REGION 46 392 59 392 50 HELIX 62 392 90 COLOUR_TEXT_REGION 62 392 90 392 50 HELIX 97 392 111 COLOUR_TEXT_REGION 97 392 111 392 50 HELIX 115 392 128 COLOUR_TEXT_REGION 115 392 128 392 50 HELIX 141 392 145 COLOUR_TEXT_REGION 141 392 145 392 50 HELIX 169 392 174 COLOUR_TEXT_REGION 169 392 174 392 50 HELIX 184 392 186 COLOUR_TEXT_REGION 184 392 186 392 50 HELIX 214 392 222 COLOUR_TEXT_REGION 214 392 222 392 50 STRAND 154 397 159 COLOUR_TEXT_REGION 154 397 159 397 51 STRAND 164 397 167 COLOUR_TEXT_REGION 164 397 167 397 51 STRAND 186 397 187 COLOUR_TEXT_REGION 186 397 187 397 51 STRAND 190 397 196 COLOUR_TEXT_REGION 190 397 196 397 51 STRAND 201 397 208 COLOUR_TEXT_REGION 201 397 208 397 51 STRAND 233 397 244 COLOUR_TEXT_REGION 233 397 244 397 51 STRAND 255 397 259 COLOUR_TEXT_REGION 255 397 259 397 51 HELIX 2 397 9 COLOUR_TEXT_REGION 2 397 9 397 50 HELIX 12 397 25 COLOUR_TEXT_REGION 12 397 25 397 50 HELIX 30 397 43 COLOUR_TEXT_REGION 30 397 43 397 50 HELIX 46 397 59 COLOUR_TEXT_REGION 46 397 59 397 50 HELIX 64 397 92 COLOUR_TEXT_REGION 64 397 92 397 50 HELIX 98 397 111 COLOUR_TEXT_REGION 98 397 111 397 50 HELIX 115 397 128 COLOUR_TEXT_REGION 115 397 128 397 50 HELIX 133 397 136 COLOUR_TEXT_REGION 133 397 136 397 50 HELIX 141 397 145 COLOUR_TEXT_REGION 141 397 145 397 50 HELIX 169 397 175 COLOUR_TEXT_REGION 169 397 175 397 50 HELIX 185 397 185 COLOUR_TEXT_REGION 185 397 185 397 50 HELIX 215 397 222 COLOUR_TEXT_REGION 215 397 222 397 50 STRAND 154 398 159 COLOUR_TEXT_REGION 154 398 159 398 51 STRAND 164 398 169 COLOUR_TEXT_REGION 164 398 169 398 51 STRAND 173 398 176 COLOUR_TEXT_REGION 173 398 176 398 51 STRAND 188 398 196 COLOUR_TEXT_REGION 188 398 196 398 51 STRAND 200 398 209 COLOUR_TEXT_REGION 200 398 209 398 51 STRAND 225 398 227 COLOUR_TEXT_REGION 225 398 227 398 51 STRAND 233 398 236 COLOUR_TEXT_REGION 233 398 236 398 51 STRAND 239 398 244 COLOUR_TEXT_REGION 239 398 244 398 51 STRAND 256 398 259 COLOUR_TEXT_REGION 256 398 259 398 51 HELIX 2 398 8 COLOUR_TEXT_REGION 2 398 8 398 50 HELIX 12 398 25 COLOUR_TEXT_REGION 12 398 25 398 50 HELIX 30 398 42 COLOUR_TEXT_REGION 30 398 42 398 50 HELIX 46 398 85 COLOUR_TEXT_REGION 46 398 85 398 50 HELIX 97 398 111 COLOUR_TEXT_REGION 97 398 111 398 50 HELIX 115 398 127 COLOUR_TEXT_REGION 115 398 127 398 50 HELIX 142 398 145 COLOUR_TEXT_REGION 142 398 145 398 50 HELIX 183 398 187 COLOUR_TEXT_REGION 183 398 187 398 50 HELIX 214 398 222 COLOUR_TEXT_REGION 214 398 222 398 50