QUERY : PYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFGPWADLVPHLDDLVADCSDERLERLLSGRPTSAWQRASYLLDSGGEPARGQALLAKRHTEVMPVTRFTTAHSGESVWAPEYQLVDELVVPLLRVIGK : QUERY
UniRef90_W4HV57 : PYLPVRAWLARDHDAGCMLAGAAAAWHLGYLDRQPQGRVSVWLPAEKRLPDGLRKYVSIVKISWNIQDTAQLAPSTALLLRRRLDIVSWATGLPAFGPEALLVQLAARPSSFGPWADIVSHLDVLAGDCVDDRLLPLLSGQSMSTWQRASYLIAVAGDPERGAALLAKNQMKMTSVVQFTHANRGKGVWVPEYQLVDDLVAPLLSVVGK : UniRef90_W4HV57
UniRef90_R4YWZ4 : PYIDLRAWKAREPDAAFALAGEAAAWHLGYLPRNFGGTIAVWLPPNERVPHGLRSYVSLVRLSWAGEQTSEFVPNSRLLRRKGLDLTNWAAGLPAFGPEALVVQLGARPASFRVWADLVPQLDVLASDCDTDKIERLLGGQSASAWQRAAYLLHRGGRSDDAVDLLDRRPSRSMPVASF--GDGATAAWSSRFSVNDHLIAPLQDQLGK : UniRef90_R4YWZ4
UniRef90_A2VLF9 : PYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFEPWADLVPHLDDVVADCSDERLERLLSGRS------------------------------------------------------------------- : UniRef90_A2VLF9
UniRef90_A0A041N0A8 : ----------------------------------------------------------LVQIATRPAYTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFGPWADLVPHLDDLVADCSDERLERLLSGRPTSAWQRASYLLDSGGEPARGQALLAKRHTEVMPVTRFTTAHRGESVWAPEYQLVDELVVPLLRVIGK : UniRef90_A0A041N0A8
UniRef90_UPI00037CDC02 : -FIEFRAQHAVNPGWSGTLAMESAASVLGLAQRIPE-REVVALDAAGALPKALEGQWRFIRLAMPVAGCTVLD------------------SLPTWTLEALIVGIATRPSSYQDLPGLGQWLPEAAGRVNADIVISLLAGARSATRQRAAYLLGAGGNAEGRSSILTAYP--ATSAVWFGPRVAGAGVFDSEAQVNDTALHPYLAV--- : UniRef90_UPI00037CDC02
UniRef90_D6E773 : PLLPMKAFMLSHPGCKCALTMQTAAWALGLADRVP------------------------------ACIEVSFEKRPAVKVPREISPSVFAKGVPCLHPESIVVHMAQKPSAVRSWQGALEWLPDVAYEMREEPLLDELAGRPQSVWSRTGYLV-SGMRPDLAEGI--SRGIETGSKVRF--GPRGSAIRNDERWKVSDTLLPF------ : UniRef90_D6E773
UniRef90_UPI0003615189 : PFIDLRAMLAGHHSATVALG--SALWLHGLAERAPD-RHEIAVPVNTVVPDSLKQRMRVVHFSA------------------RLTPAALEQ-LPVHQPATILAHLATKPGDVRDWTTFAEALPDLAERSPVNDLDKELHRRPTAVRPRLAYLL-SGVAPKTADLLQPTKPKNVT---WFG-RSRVTRRFDKRFNVADGLL--------- : UniRef90_UPI0003615189
UniRef90_D1BYM3 : PLVTLRAFLARDDVAGCL---STAIWLHGLSDRAPN-RHEVAVPPRAHVPAGLAREFRVVRFASAV--------RPAD-----------HDGVPVHGPATILVHLAARPTDVRSWGSVEEALPDLVDRADRDDLAAELSAADAATRTRLGHLL---GEIDTEELDLASLGVKARHTVWLGPRTKG-GHYDARWNVLDT----------- : UniRef90_D1BYM3
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201------ :
OrigSeq : PYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTALLAPRPALLVRRRLDLVAWATGLPALGPEALLVQIATRPASFGPWADLVPHLDDLVADCSDERLERLLSGRPTSAWQRASYLLDSGGEPARGQALLAKRHTEVMPVTRFTTAHSGESVWAPEYQLVDELVVPLLRVIGK : OrigSeq
Jnet : -----HHHH-------EEHHHHHHHHHHHH--------EEEEE-------HHH---EEEEEE-------EEE-------------------------HHHHHHHHH---------HHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHH---------------------EEEE------EEEE--HHHHHHHHHHHHHHHH-- : Jnet
jhmm : -----HHHH-------EHHHHHHHHHHHH---------EEEEE----H--HH----EEEEEE-------EEE-------------------------HHHHHHHHH--------HHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHH---------------------EEEE------EEEEE-HHHHHHHHHHHHHHHH-- : jhmm
jpssm : ----HHHHHH-----EEEEHHHHHHHHHHHHH------EEEEE--------HHH--EEEEEE------HEEE-------------------------HHHHHHHHH-----------HHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHH-----HHHHHHH--------EEEE-------EE----HHHHHHHHHHHHHHH-- : jpssm
Lupas 14 : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : --B-BBBBBB----B-BBBBB-BBBBBBBBB-----B---BBB-B---BB-BB---BBBBBBBB-B--BB-B-----B-B---B-BBBB--BBBBB-BBBBBBBBB-BB--B--B--BB-BBB-BB--B----BB-BB-----BBB-BBBBBB--BB-B--B--BB------BB-BBBB--B--B-BBB---B-BB--BBBBBB----- : Jnet_25
Jnet_5 : ----B-B--B----B-B-BB---BBB--------------B-------B---B---B-BB-B------------------------------B------BBBB-BB-----------B---B--BB--B----B---B----------BB-BB--B--------------------B-------B--------------B--B------ : Jnet_5
Jnet_0 : ------B-----------B-B--BB----------------------------------B---------------------------------------BBB--B-------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel : 99631766504788624122689998763113157884588744776242021212378885477750101046762222566764321246777650466667633678887721179999999862560178887427770279999999860477532012233367887734775267877133237017899999999987289 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.