SILENT_MODE BLOCK_FILE jp_QJug8mZ.concise.blc MAX_NSEQ 666 MAX_INPUT_LEN 668 OUTPUT_FILE jp_QJug8mZ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 413 655 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 656 413 665 H SPACE SUB_CHARS 1 656 413 665 E SPACE SUB_CHARS 1 656 413 665 - SPACE STRAND 25 659 31 COLOUR_TEXT_REGION 25 659 31 659 51 STRAND 53 659 57 COLOUR_TEXT_REGION 53 659 57 659 51 STRAND 98 659 103 COLOUR_TEXT_REGION 98 659 103 659 51 STRAND 142 659 146 COLOUR_TEXT_REGION 142 659 146 659 51 STRAND 207 659 213 COLOUR_TEXT_REGION 207 659 213 659 51 STRAND 218 659 223 COLOUR_TEXT_REGION 218 659 223 659 51 STRAND 229 659 229 COLOUR_TEXT_REGION 229 659 229 659 51 STRAND 242 659 244 COLOUR_TEXT_REGION 242 659 244 659 51 STRAND 251 659 256 COLOUR_TEXT_REGION 251 659 256 659 51 STRAND 261 659 268 COLOUR_TEXT_REGION 261 659 268 659 51 STRAND 281 659 286 COLOUR_TEXT_REGION 281 659 286 659 51 STRAND 289 659 294 COLOUR_TEXT_REGION 289 659 294 659 51 STRAND 315 659 320 COLOUR_TEXT_REGION 315 659 320 659 51 STRAND 345 659 348 COLOUR_TEXT_REGION 345 659 348 659 51 STRAND 379 659 384 COLOUR_TEXT_REGION 379 659 384 659 51 STRAND 389 659 396 COLOUR_TEXT_REGION 389 659 396 659 51 STRAND 400 659 405 COLOUR_TEXT_REGION 400 659 405 659 51 STRAND 409 659 410 COLOUR_TEXT_REGION 409 659 410 659 51 HELIX 4 659 17 COLOUR_TEXT_REGION 4 659 17 659 50 HELIX 35 659 48 COLOUR_TEXT_REGION 35 659 48 659 50 HELIX 60 659 68 COLOUR_TEXT_REGION 60 659 68 659 50 HELIX 80 659 93 COLOUR_TEXT_REGION 80 659 93 659 50 HELIX 114 659 136 COLOUR_TEXT_REGION 114 659 136 659 50 HELIX 150 659 156 COLOUR_TEXT_REGION 150 659 156 659 50 HELIX 162 659 177 COLOUR_TEXT_REGION 162 659 177 659 50 HELIX 184 659 203 COLOUR_TEXT_REGION 184 659 203 659 50 HELIX 298 659 307 COLOUR_TEXT_REGION 298 659 307 659 50 HELIX 365 659 371 COLOUR_TEXT_REGION 365 659 371 659 50 STRAND 25 664 30 COLOUR_TEXT_REGION 25 664 30 664 51 STRAND 53 664 57 COLOUR_TEXT_REGION 53 664 57 664 51 STRAND 98 664 102 COLOUR_TEXT_REGION 98 664 102 664 51 STRAND 142 664 147 COLOUR_TEXT_REGION 142 664 147 664 51 STRAND 207 664 213 COLOUR_TEXT_REGION 207 664 213 664 51 STRAND 218 664 223 COLOUR_TEXT_REGION 218 664 223 664 51 STRAND 228 664 229 COLOUR_TEXT_REGION 228 664 229 664 51 STRAND 242 664 243 COLOUR_TEXT_REGION 242 664 243 664 51 STRAND 251 664 255 COLOUR_TEXT_REGION 251 664 255 664 51 STRAND 261 664 268 COLOUR_TEXT_REGION 261 664 268 664 51 STRAND 277 664 278 COLOUR_TEXT_REGION 277 664 278 664 51 STRAND 281 664 286 COLOUR_TEXT_REGION 281 664 286 664 51 STRAND 289 664 294 COLOUR_TEXT_REGION 289 664 294 664 51 STRAND 316 664 320 COLOUR_TEXT_REGION 316 664 320 664 51 STRAND 346 664 348 COLOUR_TEXT_REGION 346 664 348 664 51 STRAND 379 664 384 COLOUR_TEXT_REGION 379 664 384 664 51 STRAND 390 664 396 COLOUR_TEXT_REGION 390 664 396 664 51 STRAND 400 664 405 COLOUR_TEXT_REGION 400 664 405 664 51 STRAND 409 664 410 COLOUR_TEXT_REGION 409 664 410 664 51 HELIX 4 664 17 COLOUR_TEXT_REGION 4 664 17 664 50 HELIX 35 664 48 COLOUR_TEXT_REGION 35 664 48 664 50 HELIX 61 664 68 COLOUR_TEXT_REGION 61 664 68 664 50 HELIX 72 664 73 COLOUR_TEXT_REGION 72 664 73 664 50 HELIX 82 664 93 COLOUR_TEXT_REGION 82 664 93 664 50 HELIX 114 664 136 COLOUR_TEXT_REGION 114 664 136 664 50 HELIX 150 664 156 COLOUR_TEXT_REGION 150 664 156 664 50 HELIX 162 664 177 COLOUR_TEXT_REGION 162 664 177 664 50 HELIX 184 664 202 COLOUR_TEXT_REGION 184 664 202 664 50 HELIX 297 664 307 COLOUR_TEXT_REGION 297 664 307 664 50 HELIX 339 664 339 COLOUR_TEXT_REGION 339 664 339 664 50 HELIX 365 664 370 COLOUR_TEXT_REGION 365 664 370 664 50 STRAND 25 665 31 COLOUR_TEXT_REGION 25 665 31 665 51 STRAND 53 665 56 COLOUR_TEXT_REGION 53 665 56 665 51 STRAND 98 665 103 COLOUR_TEXT_REGION 98 665 103 665 51 STRAND 142 665 146 COLOUR_TEXT_REGION 142 665 146 665 51 STRAND 207 665 213 COLOUR_TEXT_REGION 207 665 213 665 51 STRAND 218 665 223 COLOUR_TEXT_REGION 218 665 223 665 51 STRAND 242 665 245 COLOUR_TEXT_REGION 242 665 245 665 51 STRAND 252 665 256 COLOUR_TEXT_REGION 252 665 256 665 51 STRAND 261 665 268 COLOUR_TEXT_REGION 261 665 268 665 51 STRAND 281 665 286 COLOUR_TEXT_REGION 281 665 286 665 51 STRAND 289 665 294 COLOUR_TEXT_REGION 289 665 294 665 51 STRAND 314 665 319 COLOUR_TEXT_REGION 314 665 319 665 51 STRAND 344 665 349 COLOUR_TEXT_REGION 344 665 349 665 51 STRAND 379 665 384 COLOUR_TEXT_REGION 379 665 384 665 51 STRAND 389 665 395 COLOUR_TEXT_REGION 389 665 395 665 51 STRAND 400 665 405 COLOUR_TEXT_REGION 400 665 405 665 51 STRAND 408 665 411 COLOUR_TEXT_REGION 408 665 411 665 51 HELIX 3 665 16 COLOUR_TEXT_REGION 3 665 16 665 50 HELIX 35 665 48 COLOUR_TEXT_REGION 35 665 48 665 50 HELIX 60 665 67 COLOUR_TEXT_REGION 60 665 67 665 50 HELIX 76 665 94 COLOUR_TEXT_REGION 76 665 94 665 50 HELIX 114 665 136 COLOUR_TEXT_REGION 114 665 136 665 50 HELIX 150 665 156 COLOUR_TEXT_REGION 150 665 156 665 50 HELIX 162 665 178 COLOUR_TEXT_REGION 162 665 178 665 50 HELIX 184 665 203 COLOUR_TEXT_REGION 184 665 203 665 50 HELIX 298 665 307 COLOUR_TEXT_REGION 298 665 307 665 50 HELIX 365 665 371 COLOUR_TEXT_REGION 365 665 371 665 50