QUERY           : MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKKGLLVF : QUERY 
UniRef90_F8KTU2 : MFEKLELIIKNIENSKEEIEVLLKIANISLGDFILMKRGSLDIPDTLNMAFYTQIGEHVEELKEHINALNKYKREMLVF : UniRef90_F8KTU2
UniRef90_V8CDA8 : MFEKINEIIANIEEIRDEITILLGMAKISFVDYIMIKRGSMDMPEGMQMSVWEHLNEEVDKLKAQIDLLNKLKREMLVF : UniRef90_V8CDA8
UniRef90_Q7MSV7 : MFEKIDLILRGIEASREEIEILLNMAKISFVDYIMIKRGSMDMPEHLGVWNLQQIDTEVAKLKEHIEALNKIKKEVL-- : UniRef90_Q7MSV7
UniRef90_N2BLY8 : MFERINQIIKNIENIQDEITIALNMAKISLEDYIMIKRGSLDIPEHLNMSLFAAVDEQVMALKKEIDVLNKLKKEWFVY : UniRef90_N2BLY8
UniRef90_C5EYL1 : MFERIDSILQNIEEAQAEIKLLLGMAKISFVDYIMIKRGSQDMPEELGAWNLQQIDNEVSKLKEAIDSLNKIKKEVLTW : UniRef90_C5EYL1
UniRef90_I2FEC3 : MWEKIDEIFKSIEDIRDDINILLNIAKISLVDYIMIKRGSQDMPEHLSFDLLAQIDVEIDKLKAQIDSLNRLKRELLVF : UniRef90_I2FEC3
UniRef90_Q7VGZ6 : MFEKIDEIFKNIEDIRDDINILLNIAKISLIDYIMIKRGSQDMPEHLT------------------------------- : UniRef90_Q7VGZ6
UniRef90_H5VAS9 : MFEKLELIIKNIENSKEEIEVLLKIANISLGDFIFDETGELRHP----------------------------------- : UniRef90_H5VAS9
UniRef90_E7A8U7 : MFERLDQLIKDIENAKEEVELLLKLANVSLSDFILMKRGSLDIPEGLDMAFYTQ------------------------- : UniRef90_E7A8U7
UniRef90_C5ZYK6 : MFERIDSLLKKIEEAQAEIEFLLRLAKISFVDYVMIKRGSQDMPPSLDMWN---------------------------- : UniRef90_C5ZYK6

                : 1---------11--------21--------31--------41--------51--------61--------71------- :
OrigSeq         : MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKKGLLVF : OrigSeq

Jnet            : --HHHHHHHHHHHHHHHHHHHHHHHH------EEEE----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- : Jnet
jhmm            : --HHHHHHHHHHHHHHHHHHHHHHHHHH----EEEE----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HE--- : jhmm
jpssm           : -HHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- : jpssm

Lupas 14        : ---------------------------------------------------cccccccCCCCCCCCCCCCCC------- : Lupas 14
Lupas 21        : ----ccccccccccccccccccccc--------------------------CCCCCCCCCCCCCCCCCCCCCccc---- : Lupas 21
Lupas 28        : ---------------------------------------------------cccccccccccccccccccccccccccc : Lupas 28

Jnet_25         : ----B--BB--B--B---B-BBB-BB-BBBBBBBBB--B---BB--B---BB--B---B--B---B-BB--B---BB-- : Jnet_25
Jnet_5          : -------BB---------B--BB-B----B---B------------B-------B---B--B---B--B---------- : Jnet_5
Jnet_0          : ---------------------B--------------------------------------------------------- : Jnet_0
Jnet Rel        : 7289999987479999999999985233875212310467877643008999998589999999999999998250489 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.