SILENT_MODE
BLOCK_FILE jp_xssmwQ6.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_xssmwQ6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 47 32   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 33 47 42 H SPACE
SUB_CHARS 1 33 47 42 E SPACE
SUB_CHARS 1 33 47 42 - SPACE
HELIX 2 36 10
COLOUR_TEXT_REGION 2 36 10 36 50
HELIX 17 36 26
COLOUR_TEXT_REGION 17 36 26 36 50
HELIX 30 36 39
COLOUR_TEXT_REGION 30 36 39 36 50
HELIX 2 41 10
COLOUR_TEXT_REGION 2 41 10 41 50
HELIX 16 41 26
COLOUR_TEXT_REGION 16 41 26 41 50
HELIX 30 41 39
COLOUR_TEXT_REGION 30 41 39 41 50
HELIX 42 41 43
COLOUR_TEXT_REGION 42 41 43 41 50
HELIX 2 42 10
COLOUR_TEXT_REGION 2 42 10 42 50
HELIX 18 42 26
COLOUR_TEXT_REGION 18 42 26 42 50
HELIX 31 42 39
COLOUR_TEXT_REGION 31 42 39 42 50