QUERY                  : SALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAKYVAN : QUERY 
UniRef90_W5KJD1        : SALQDLLRTLRSPSSPLQQQQVLNILRSNPQLMATFIKQRAPKY--- : UniRef90_W5KJD1
UniRef90_K7EGW4        : AALQNLLRTLRSPSSPLQQQQVLNILRSNPQLLTAFISQRAAKYAGT : UniRef90_K7EGW4
UniRef90_E9GB06        : SALHQLLKTLREPSTPEQQQEVVTILRGNPQLMAAFVKQR------- : UniRef90_E9GB06
UniRef90_UPI0003C1776C : -SLQDLLQALRAPSSPIQQQRVLDILKANPQLMAAFIKQRAAKYQKS : UniRef90_UPI0003C1776C
UniRef90_M4A5M6        : GAVQELLRTLRSPTSPQQQQQVLNILRSNPTLMAAFIRQRTARYQGS : UniRef90_M4A5M6
UniRef90_F8W518        : AALQDLLRFLRLPSSPHQQQQVLSILRSNPLLMATFIRQRAPRYL-- : UniRef90_F8W518
UniRef90_W4VRK9        : -ALQQLMATLRNPASPDQQQQVLQILKANPQIMAAFIKQR------- : UniRef90_W4VRK9
UniRef90_A0A026W1M1    : -ALQQLMQTLKSPTSAEQQNQILQILKSNPPLMAAFIK--------- : UniRef90_A0A026W1M1
UniRef90_UPI0004548376 : --LQTLLRILRSPRSREQQQQVLNILRSNPHLLAAFIKQRATNYART : UniRef90_UPI0004548376
UniRef90_UPI0002658AD4 : -ALQQLIHTLKKPQTPQQHQQVLTILKSNPALMAAFIKRQQLHQQQN : UniRef90_UPI0002658AD4
UniRef90_B0WGE7        : AAIAQLMATLKNPAGPEQQQQLLSILKANPQLMAAFIKQR------- : UniRef90_B0WGE7
UniRef90_UPI0003B53019 : -------QAMMAAHSPLQQQQVLNILRSNPQLLAAFIKQRASKYKG- : UniRef90_UPI0003B53019
UniRef90_K1S5V1        : -ALHELLKTLKSPSSNQQQAQVLQILKSNPQLMAAFI---------- : UniRef90_K1S5V1
UniRef90_D2XMR0        : AALQQLLETLKGPSSVQQQQKVLNILKSNPQLMAAFIKQR------- : UniRef90_D2XMR0
UniRef90_G1QCZ0        : GALQDLLWTLKSPSSP--QQHVLNILKSNPQLMAALTKNRPSKWPAS : UniRef90_G1QCZ0
UniRef90_B4PWY3        : --LAQIMQKIKNNPTNESNQHILTILKQNPQIMAAIIKQRQQSHQS- : UniRef90_B4PWY3
UniRef90_W4YT84        : ----------KSPHSPQQQKQVLTILKSNPQLMAAFIKQRS------ : UniRef90_W4YT84
UniRef90_UPI0003C8F8E7 : ----------RPGASHPQQQQVLNTHKSNPQLMAAFIKQRTAKYVAN : UniRef90_UPI0003C8F8E7
UniRef90_A0A026W4G0    : -ALQQLMQTLKSPASAEQQNQILQILKSNPPLMAAFIKQRVSEF--- : UniRef90_A0A026W4G0
UniRef90_R7V4Z9        : --------TLRSPSSPQQQETVLTILKSHPQLMAAFIK--------- : UniRef90_R7V4Z9
UniRef90_X1WG57        : GALQQLLRTLRSPSSPQQQQQVLNILRSSPLLMAAFIKQRVHKYK-- : UniRef90_X1WG57
UniRef90_S4NY48        : -ALQQLMATLRSPTSHNQQQEILQILKSNPPLMAAFIKQR------- : UniRef90_S4NY48
UniRef90_G1PZF4        : GGLQDLLRTLKSPSP--QQQHVLSIPKSNPQLMADLIKYQP------ : UniRef90_G1PZF4
UniRef90_J9JSK5        : -SLQQLLNALRTNSPPEQQQRLREILRSNPQLLAQFIRN-------- : UniRef90_J9JSK5
UniRef90_W8BK08        : AQLALIMQKIKNNPSHD-NQQILQVLKRNPQIMAAIIKQRSQSQPSA : UniRef90_W8BK08
UniRef90_T1K971        : --MQQLITMLKSPSSQSQQQQVIHILQSNPKLMAAFLKQRSATH--- : UniRef90_T1K971
UniRef90_L9KNW9        : ---------------------VLSILHANPQLLAAFIKQRAAKYANS : UniRef90_L9KNW9
UniRef90_E9GW09        : --LRQLVETIKSPNTAEQQYQAVRILRSDPRLMAAFLRQRSASSHGN : UniRef90_E9GW09

                       : 1---------11--------21--------31--------41----- :
OrigSeq                : SALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAKYVAN : OrigSeq

Jnet                   : -HHHHHHHHH------HHHHHHHHHH---HHHHHHHHHH-------- : Jnet
jhmm                   : -HHHHHHHHH-----HHHHHHHHHHH---HHHHHHHHHH--HH---- : jhmm
jpssm                  : -HHHHHHHHH-------HHHHHHHHH----HHHHHHHHH-------- : jpssm

Lupas 14               : ----------------------------------------------- : Lupas 14
Lupas 21               : ----------------------------------------------- : Lupas 21
Lupas 28               : ----------------------------------------------- : Lupas 28

Jnet_25                : --B--BB--B-----------BB-BB---B-BBB-BB---------- : Jnet_25
Jnet_5                 : -----BB--------------B---------BBB-BB---------- : Jnet_5
Jnet_0                 : --------------------------------B-------------- : Jnet_0
Jnet Rel               : 74899999752788802256776773067068999986224127899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.