Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V 1 S 3 -2 0 -2 -2 -1 -2 3 -2 -3 -3 -1 -2 -3 -2 3 0 -3 -3 -2 34 0 5 0 0 0 0 31 0 0 0 0 0 0 0 28 2 0 0 0 0.51 0.22 2 A 5 -2 -2 -2 -1 -2 -2 1 -2 -2 -3 -2 -2 -3 -2 1 -1 -3 -3 -1 85 0 0 0 0 0 0 6 0 0 0 0 0 0 0 10 0 0 0 0 0.71 0.30 3 L -2 -3 -4 -5 -2 -3 -4 -5 -4 1 5 -3 2 -1 -4 -3 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 3 89 0 5 0 0 0 0 0 0 3 0.87 0.37 4 Q 1 0 -1 -2 -3 6 1 -2 2 -4 -3 0 -2 -4 -2 -1 -2 -3 -2 -3 17 2 0 0 0 75 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0.91 0.37 5 D -2 -1 1 3 -4 6 2 -3 -1 -4 -4 0 -2 -4 -2 -1 -1 -4 -3 -3 0 0 7 24 0 54 13 0 0 0 0 0 0 0 0 0 3 0 0 0 0.83 0.37 6 L -2 -3 -5 -5 -2 -3 -4 -5 -4 2 5 -4 1 -1 -4 -4 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 11 89 0 0 0 0 0 0 0 0 0 0.88 0.37 7 L -2 -3 -4 -5 -2 -3 -4 -4 -3 2 4 -3 5 -1 -4 -3 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 9 60 0 29 0 0 0 0 0 0 1 0.77 0.37 8 R 0 4 1 -1 -4 4 0 -2 2 -4 -3 1 -2 -4 -3 -1 0 2 -2 -3 9 33 6 1 0 29 2 2 5 0 0 5 0 0 0 0 5 4 0 0 0.54 0.39 9 T 1 -2 -1 -2 -2 -1 -2 -2 -3 -1 -2 1 1 -1 -2 0 5 -3 -2 -1 15 0 0 0 0 0 0 0 0 2 0 10 6 3 0 0 64 0 0 0 0.58 0.38 10 L -2 -3 -4 -5 -2 -3 -4 -5 -4 2 5 -4 2 -1 -4 -3 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 10 85 0 4 0 0 0 0 0 0 0 0.86 0.38 11 K -2 5 -1 -2 -4 0 -1 -3 -2 -4 -3 5 0 -4 -3 -2 -2 -4 -3 -3 0 50 0 0 0 0 0 0 0 0 0 47 3 0 0 0 0 0 0 0 0.98 0.41 12 S 0 -2 3 -1 -2 -1 0 -1 -2 -3 -3 0 -3 -4 1 5 1 -4 -3 -3 5 0 14 0 0 0 3 2 0 0 2 3 0 0 5 61 6 0 0 0 0.59 0.41 13 P -1 -3 1 0 -4 -2 -2 -1 -3 -4 -4 -2 -4 -5 7 -2 -2 -5 -4 -4 3 0 9 6 0 0 0 5 0 0 0 0 0 0 78 0 0 0 0 0 1.75 0.41 14 S 1 -1 0 -2 -2 0 -1 -2 3 -3 -3 -1 -3 -4 2 4 1 -4 -2 -3 11 2 3 0 0 4 0 0 10 0 0 0 0 0 9 57 5 0 0 0 0.59 0.41 15 S 0 -2 -1 -2 -2 -1 -1 -1 -2 -3 -3 -1 -3 -4 2 5 3 -4 -3 -2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 10 65 22 0 0 0 0.74 0.41 16 P -1 -1 1 -2 -4 0 -2 -3 3 -3 -3 -2 -3 -4 7 -2 -2 -4 -3 -2 2 3 10 0 0 4 0 0 9 2 0 0 0 0 65 0 0 0 0 2 1.36 0.39 17 Q -2 -1 0 0 -3 4 3 -3 1 -1 0 -1 1 -3 1 0 -2 -3 -2 -2 1 0 4 3 0 25 28 1 3 2 14 0 4 0 6 6 0 0 0 1 0.38 0.38 18 Q -2 0 -1 -1 -4 7 1 -3 -1 -4 -3 0 -2 -4 -2 1 -1 -3 -2 -3 0 0 0 0 0 88 0 0 0 0 0 0 0 0 0 9 0 0 0 0 1.13 0.40 19 Q -2 0 2 -1 -4 7 1 -3 1 -4 -3 0 -2 -4 -2 -1 -2 -3 -2 -3 0 0 9 0 0 89 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1.18 0.41 20 Q -2 0 1 -1 -4 7 1 -3 0 -4 -3 0 -2 -4 -2 -1 -1 -3 -3 -3 1 0 7 0 0 84 3 0 1 0 0 1 0 0 0 0 3 0 0 0 1.09 0.41 21 Q -2 1 -1 -1 -4 6 2 -3 5 -4 -3 0 -2 -4 -3 -1 -1 -3 -2 -3 0 8 0 0 0 64 7 0 17 0 0 2 0 0 0 0 3 0 0 0 0.94 0.41 22 V -1 -3 -4 -4 -2 -3 -4 -4 -4 3 1 -3 0 -1 -3 -3 -1 -4 -2 5 0 0 0 0 0 0 0 0 0 17 8 0 0 0 0 0 0 0 0 75 0.70 0.30 23 L -2 0 -4 -4 -2 -3 -4 -5 -4 1 5 -3 1 -1 -4 -3 -2 -3 -2 1 0 6 0 0 0 0 0 0 0 6 83 0 0 0 0 0 0 0 0 5 0.69 0.30 24 N -1 -1 4 0 -3 2 1 -2 2 -3 -3 0 -2 -4 -2 2 2 -4 -2 -3 0 0 35 2 0 12 6 0 8 0 0 3 0 0 0 18 18 0 0 0 0.50 0.30 25 I -2 -4 -4 -4 -2 -4 -4 -5 -4 6 1 -3 0 -1 -4 -3 0 -4 -2 2 0 0 0 0 0 0 0 0 0 94 0 0 0 0 0 0 6 0 0 0 0.82 0.30 26 L -2 -3 -4 -4 -2 -3 -3 -4 1 1 5 -3 1 -1 0 -3 -2 -3 -2 0 0 0 0 0 0 0 0 0 6 0 89 0 0 0 5 0 0 0 0 0 0.71 0.30 27 K -2 4 0 -2 -4 1 0 -3 2 -4 -3 5 -2 -4 -2 -1 -2 -4 -2 -3 0 34 3 0 0 6 0 0 6 0 0 52 0 0 0 0 0 0 0 0 0.76 0.30 28 S 1 -2 0 -1 -2 1 -1 0 -2 -3 -3 -1 -2 -3 -2 5 0 -4 -3 -2 11 0 0 0 0 7 0 4 0 0 0 0 0 0 0 79 0 0 0 0 0.67 0.30 29 N -2 -1 7 0 -4 -1 -1 -1 1 -4 -4 -1 -3 -4 -3 0 -1 -5 -3 -4 0 0 94 0 0 0 0 0 3 0 0 0 0 0 0 3 0 0 0 0 1.18 0.30 30 P -2 -3 -3 -2 -4 -2 -2 -3 -3 -4 -4 -2 -3 -5 8 -2 -2 -5 -4 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.38 0.30 31 Q -1 0 -1 -1 -4 6 1 -3 2 -3 -2 1 -1 -4 2 -1 -1 -3 -2 -3 2 1 0 0 0 69 0 0 4 0 5 6 0 0 9 0 3 0 0 0 0.76 0.30 32 L -2 -3 -4 -5 -2 -3 -4 -5 -4 2 5 -3 1 0 -4 -3 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 10 90 0 0 0 0 0 0 0 0 0 0.81 0.30 33 M -2 -2 -3 -4 -2 -1 -3 -4 -3 0 2 -2 8 -1 -3 -3 -2 -2 -2 0 0 0 0 0 0 0 0 0 0 0 18 0 82 0 0 0 0 0 0 0 0.92 0.30 34 A 5 -2 -2 -3 -1 -2 -2 -1 -3 -2 -2 -2 -2 -3 -2 0 0 -3 -3 -1 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0.79 0.30 35 A 5 -2 -2 0 -1 0 -1 -1 -2 -2 -2 -1 -2 -3 -2 0 0 -3 -3 -1 84 0 0 5 0 6 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0.64 0.30 36 F -3 -4 -4 -4 -3 -4 -4 -4 -2 1 1 -4 0 7 -4 -3 -3 0 2 -1 0 0 0 0 0 0 0 0 0 7 8 0 0 85 0 0 0 0 0 0 1.12 0.30 37 I -2 -4 -4 -2 -2 -3 -4 -4 -4 6 1 -3 0 -1 -4 -3 -1 -4 -2 2 0 0 0 3 0 0 0 0 0 82 6 0 0 0 0 0 3 0 0 6 0.72 0.30 38 K -1 3 0 -2 -4 0 0 -2 -1 -4 -3 6 -2 -4 -2 0 -1 -4 -3 -3 0 12 3 0 0 0 0 0 0 0 0 77 0 0 0 8 0 0 0 0 0.79 0.30 39 Q -2 1 2 -1 -4 7 1 -3 0 -4 -3 0 -1 -3 -2 -1 -1 -2 1 -3 0 2 10 0 0 82 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0.92 0.30 40 R -2 6 -1 -2 -4 2 -1 -3 -1 -4 -3 1 -2 -4 -3 -1 -2 -3 -2 -3 0 89 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.09 0.27 41 T 3 -2 -2 -2 -2 0 -1 -2 -2 -1 -1 -1 -1 -3 3 1 2 -3 -3 0 37 0 0 0 0 6 0 0 0 0 4 0 0 0 15 10 17 0 0 10 0.37 0.27 42 A 4 -2 -2 -2 -2 1 -1 -1 2 -2 -2 -1 -2 -3 2 2 0 -3 -2 -2 55 0 0 0 0 9 0 0 6 0 3 0 0 0 9 16 2 0 0 0 0.43 0.26 43 K -1 3 0 -1 -3 0 1 -2 -1 -3 -3 5 -2 -4 -2 1 1 -4 -3 -1 0 12 3 0 0 0 4 0 0 0 0 59 0 0 0 9 8 0 0 4 0.55 0.27 44 Y -3 -2 -2 -3 -3 -2 -2 -4 5 -2 -2 -2 -2 2 -4 -2 -3 5 7 -2 0 0 0 0 0 0 0 0 21 0 0 0 0 4 0 0 0 8 67 0 1.14 0.27 45 V 1 -1 -2 -2 -2 4 0 -2 -2 0 0 1 -1 -3 2 -1 -1 -3 -2 1 17 0 0 0 0 38 0 0 0 3 10 7 0 0 9 0 0 0 0 15 0.31 0.23 46 A 3 -2 1 -1 -2 -1 -1 3 -2 -3 -3 0 -2 -3 -2 2 -1 -3 -3 -2 44 0 9 0 0 0 0 28 0 0 0 5 0 0 0 15 0 0 0 0 0.44 0.18 47 N 0 -1 3 0 -2 -1 -1 -1 -1 -3 -3 -1 -2 -3 -2 4 2 -3 -2 -2 0 0 24 0 0 0 0 0 0 0 0 0 0 0 0 60 16 0 0 0 0.50 0.14 K Lambda Standard Ungapped 0.1226 0.3132 Standard Gapped 0.0410 0.2670 PSI Ungapped 0.1658 0.3188 PSI Gapped 0.0507 0.2670