SILENT_MODE
BLOCK_FILE jp_XMsKK9N.concise.blc
MAX_NSEQ 806
MAX_INPUT_LEN 808
OUTPUT_FILE jp_XMsKK9N.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 124 795   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 796 124 805 H SPACE
SUB_CHARS 1 796 124 805 E SPACE
SUB_CHARS 1 796 124 805 - SPACE
STRAND 17 799 23
COLOUR_TEXT_REGION 17 799 23 799 51
STRAND 28 799 34
COLOUR_TEXT_REGION 28 799 34 799 51
STRAND 48 799 53
COLOUR_TEXT_REGION 48 799 53 799 51
STRAND 58 799 62
COLOUR_TEXT_REGION 58 799 62 799 51
STRAND 69 799 77
COLOUR_TEXT_REGION 69 799 77 799 51
STRAND 83 799 89
COLOUR_TEXT_REGION 83 799 89 799 51
STRAND 95 799 96
COLOUR_TEXT_REGION 95 799 96 799 51
STRAND 102 799 102
COLOUR_TEXT_REGION 102 799 102 799 51
STRAND 104 799 107
COLOUR_TEXT_REGION 104 799 107 799 51
STRAND 114 799 114
COLOUR_TEXT_REGION 114 799 114 799 51
HELIX 37 799 46
COLOUR_TEXT_REGION 37 799 46 799 50
STRAND 17 804 23
COLOUR_TEXT_REGION 17 804 23 804 51
STRAND 28 804 33
COLOUR_TEXT_REGION 28 804 33 804 51
STRAND 48 804 53
COLOUR_TEXT_REGION 48 804 53 804 51
STRAND 58 804 63
COLOUR_TEXT_REGION 58 804 63 804 51
STRAND 69 804 77
COLOUR_TEXT_REGION 69 804 77 804 51
STRAND 83 804 90
COLOUR_TEXT_REGION 83 804 90 804 51
STRAND 95 804 96
COLOUR_TEXT_REGION 95 804 96 804 51
STRAND 105 804 107
COLOUR_TEXT_REGION 105 804 107 804 51
HELIX 6 804 7
COLOUR_TEXT_REGION 6 804 7 804 50
HELIX 37 804 46
COLOUR_TEXT_REGION 37 804 46 804 50
STRAND 16 805 23
COLOUR_TEXT_REGION 16 805 23 805 51
STRAND 28 805 34
COLOUR_TEXT_REGION 28 805 34 805 51
STRAND 48 805 53
COLOUR_TEXT_REGION 48 805 53 805 51
STRAND 58 805 62
COLOUR_TEXT_REGION 58 805 62 805 51
STRAND 69 805 77
COLOUR_TEXT_REGION 69 805 77 805 51
STRAND 83 805 88
COLOUR_TEXT_REGION 83 805 88 805 51
STRAND 102 805 107
COLOUR_TEXT_REGION 102 805 107 805 51
STRAND 113 805 114
COLOUR_TEXT_REGION 113 805 114 805 51
HELIX 37 805 46
COLOUR_TEXT_REGION 37 805 46 805 50