SILENT_MODE
BLOCK_FILE jp_lC5ofjj.concise.blc
MAX_NSEQ 845
MAX_INPUT_LEN 847
OUTPUT_FILE jp_lC5ofjj.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 123 834   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 835 123 844 H SPACE
SUB_CHARS 1 835 123 844 E SPACE
SUB_CHARS 1 835 123 844 - SPACE
HELIX 15 838 42
COLOUR_TEXT_REGION 15 838 42 838 50
HELIX 46 838 58
COLOUR_TEXT_REGION 46 838 58 838 50
HELIX 62 838 74
COLOUR_TEXT_REGION 62 838 74 838 50
HELIX 79 838 96
COLOUR_TEXT_REGION 79 838 96 838 50
HELIX 100 838 120
COLOUR_TEXT_REGION 100 838 120 838 50
HELIX 15 843 43
COLOUR_TEXT_REGION 15 843 43 843 50
HELIX 46 843 59
COLOUR_TEXT_REGION 46 843 59 843 50
HELIX 62 843 74
COLOUR_TEXT_REGION 62 843 74 843 50
HELIX 79 843 96
COLOUR_TEXT_REGION 79 843 96 843 50
HELIX 100 843 120
COLOUR_TEXT_REGION 100 843 120 843 50
HELIX 15 844 42
COLOUR_TEXT_REGION 15 844 42 844 50
HELIX 46 844 58
COLOUR_TEXT_REGION 46 844 58 844 50
HELIX 62 844 73
COLOUR_TEXT_REGION 62 844 73 844 50
HELIX 79 844 96
COLOUR_TEXT_REGION 79 844 96 844 50
HELIX 100 844 120
COLOUR_TEXT_REGION 100 844 120 844 50