SILENT_MODE
BLOCK_FILE jp_HpR_w4K.concise.blc
MAX_NSEQ 698
MAX_INPUT_LEN 700
OUTPUT_FILE jp_HpR_w4K.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 80 687   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 688 80 697 H SPACE
SUB_CHARS 1 688 80 697 E SPACE
SUB_CHARS 1 688 80 697 - SPACE
STRAND 5 691 11
COLOUR_TEXT_REGION 5 691 11 691 51
STRAND 17 691 20
COLOUR_TEXT_REGION 17 691 20 691 51
STRAND 37 691 40
COLOUR_TEXT_REGION 37 691 40 691 51
STRAND 50 691 56
COLOUR_TEXT_REGION 50 691 56 691 51
HELIX 25 691 33
COLOUR_TEXT_REGION 25 691 33 691 50
HELIX 58 691 75
COLOUR_TEXT_REGION 58 691 75 691 50
STRAND 5 696 11
COLOUR_TEXT_REGION 5 696 11 696 51
STRAND 16 696 20
COLOUR_TEXT_REGION 16 696 20 696 51
STRAND 37 696 39
COLOUR_TEXT_REGION 37 696 39 696 51
STRAND 51 696 56
COLOUR_TEXT_REGION 51 696 56 696 51
HELIX 25 696 33
COLOUR_TEXT_REGION 25 696 33 696 50
HELIX 58 696 75
COLOUR_TEXT_REGION 58 696 75 696 50
STRAND 5 697 11
COLOUR_TEXT_REGION 5 697 11 697 51
STRAND 18 697 20
COLOUR_TEXT_REGION 18 697 20 697 51
STRAND 37 697 41
COLOUR_TEXT_REGION 37 697 41 697 51
STRAND 50 697 56
COLOUR_TEXT_REGION 50 697 56 697 51
HELIX 24 697 32
COLOUR_TEXT_REGION 24 697 32 697 50
HELIX 58 697 75
COLOUR_TEXT_REGION 58 697 75 697 50