SILENT_MODE
BLOCK_FILE jp_Lggewlk.concise.blc
MAX_NSEQ 971
MAX_INPUT_LEN 973
OUTPUT_FILE jp_Lggewlk.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 131 960   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 961 131 970 H SPACE
SUB_CHARS 1 961 131 970 E SPACE
SUB_CHARS 1 961 131 970 - SPACE
STRAND 21 964 23
COLOUR_TEXT_REGION 21 964 23 964 51
STRAND 31 964 37
COLOUR_TEXT_REGION 31 964 37 964 51
STRAND 42 964 47
COLOUR_TEXT_REGION 42 964 47 964 51
STRAND 54 964 59
COLOUR_TEXT_REGION 54 964 59 964 51
STRAND 76 964 77
COLOUR_TEXT_REGION 76 964 77 964 51
STRAND 87 964 91
COLOUR_TEXT_REGION 87 964 91 964 51
HELIX 7 964 16
COLOUR_TEXT_REGION 7 964 16 964 50
HELIX 62 964 71
COLOUR_TEXT_REGION 62 964 71 964 50
HELIX 98 964 114
COLOUR_TEXT_REGION 98 964 114 964 50
HELIX 119 964 125
COLOUR_TEXT_REGION 119 964 125 964 50
STRAND 21 969 23
COLOUR_TEXT_REGION 21 969 23 969 51
STRAND 31 969 37
COLOUR_TEXT_REGION 31 969 37 969 51
STRAND 42 969 47
COLOUR_TEXT_REGION 42 969 47 969 51
STRAND 54 969 60
COLOUR_TEXT_REGION 54 969 60 969 51
STRAND 76 969 78
COLOUR_TEXT_REGION 76 969 78 969 51
STRAND 88 969 91
COLOUR_TEXT_REGION 88 969 91 969 51
HELIX 7 969 16
COLOUR_TEXT_REGION 7 969 16 969 50
HELIX 62 969 70
COLOUR_TEXT_REGION 62 969 70 969 50
HELIX 98 969 114
COLOUR_TEXT_REGION 98 969 114 969 50
HELIX 119 969 124
COLOUR_TEXT_REGION 119 969 124 969 50
STRAND 21 970 23
COLOUR_TEXT_REGION 21 970 23 970 51
STRAND 31 970 38
COLOUR_TEXT_REGION 31 970 38 970 51
STRAND 42 970 47
COLOUR_TEXT_REGION 42 970 47 970 51
STRAND 55 970 59
COLOUR_TEXT_REGION 55 970 59 970 51
STRAND 87 970 91
COLOUR_TEXT_REGION 87 970 91 970 51
HELIX 7 970 15
COLOUR_TEXT_REGION 7 970 15 970 50
HELIX 62 970 72
COLOUR_TEXT_REGION 62 970 72 970 50
HELIX 98 970 114
COLOUR_TEXT_REGION 98 970 114 970 50
HELIX 119 970 125
COLOUR_TEXT_REGION 119 970 125 970 50