QUERY                  : MASEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKNKMQQK : QUERY 
UniRef90_F6SVZ6        : -APGELRKDLEEVKELLGKATRKRVRDVLTAEKSKLETEIKHKTKQK : UniRef90_F6SVZ6
UniRef90_L9JK83        : ---EELQKDLE-VKVILEKATRKRVRDALTAERFKIETEIKNKMQQK : UniRef90_L9JK83
UniRef90_L9L525        : ---EELQKDQEEVKALVGKATKKRVHNAFTIEKSKIETEIKNKMQQK : UniRef90_L9L525
UniRef90_UPI0003C44AB0 : -----LEKDLEEVKELMKKATRKRVYDILIAEKYKLEMEIKN----- : UniRef90_UPI0003C44AB0
UniRef90_U3I6T9        : --ANQLLKDLEEVKELLVKVTRKRLRDVLLTEKHKLELEIKNQ---- : UniRef90_U3I6T9
UniRef90_G5C9U6        : --------------MLLEKATRKRVRDALTAEKSKIKTEIKNKVQQK : UniRef90_G5C9U6
UniRef90_L9KXD4        : -----------------------KVRDALTAKKPNIETPIKNKMQQK : UniRef90_L9KXD4
UniRef90_UPI0004434593 : -----------------------RVRDVLTAEKSKLETEIKHKTKQK : UniRef90_UPI0004434593
UniRef90_UPI00032AFCF5 : -----------------------RVRDALTAEKAKIETEVRNKMQQK : UniRef90_UPI00032AFCF5
UniRef90_Q9CXW3        : -----------------------RLRDTLTSEKSKIETELKNKMQQK : UniRef90_Q9CXW3

                       : 1---------11--------21--------31--------41----- :
OrigSeq                : MASEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKNKMQQK : OrigSeq

Jnet                   : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH--- : Jnet
jhmm                   : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHH--- : jhmm
jpssm                  : --HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-- : jpssm

Lupas 14               : ---------cccccccccccccc------------------------ : Lupas 14
Lupas 21               : --CCCCCCCCCCCCCCCCCCCCC------------------------ : Lupas 21
Lupas 28               : ----------------------------------------------- : Lupas 28

Jnet_25                : -----B---B--B--BB--BB---B--BB-B----B---B---B--- : Jnet_25
Jnet_5                 : ------------B-----------B---B------------------ : Jnet_5
Jnet_0                 : ----------------------------------------------- : Jnet_0
Jnet Rel               : 98389999999999999999999986644223432417899987279 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.