SILENT_MODE
BLOCK_FILE jp_G5tVGs9.concise.blc
MAX_NSEQ 935
MAX_INPUT_LEN 937
OUTPUT_FILE jp_G5tVGs9.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 167 924   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 925 167 934 H SPACE
SUB_CHARS 1 925 167 934 E SPACE
SUB_CHARS 1 925 167 934 - SPACE
STRAND 26 928 29
COLOUR_TEXT_REGION 26 928 29 928 51
STRAND 50 928 58
COLOUR_TEXT_REGION 50 928 58 928 51
STRAND 100 928 105
COLOUR_TEXT_REGION 100 928 105 928 51
STRAND 121 928 128
COLOUR_TEXT_REGION 121 928 128 928 51
STRAND 132 928 139
COLOUR_TEXT_REGION 132 928 139 928 51
HELIX 9 928 21
COLOUR_TEXT_REGION 9 928 21 928 50
HELIX 30 928 42
COLOUR_TEXT_REGION 30 928 42 928 50
HELIX 61 928 67
COLOUR_TEXT_REGION 61 928 67 928 50
HELIX 71 928 76
COLOUR_TEXT_REGION 71 928 76 928 50
HELIX 82 928 96
COLOUR_TEXT_REGION 82 928 96 928 50
HELIX 145 928 165
COLOUR_TEXT_REGION 145 928 165 928 50
STRAND 25 933 29
COLOUR_TEXT_REGION 25 933 29 933 51
STRAND 49 933 52
COLOUR_TEXT_REGION 49 933 52 933 51
STRAND 55 933 58
COLOUR_TEXT_REGION 55 933 58 933 51
STRAND 100 933 106
COLOUR_TEXT_REGION 100 933 106 933 51
STRAND 121 933 128
COLOUR_TEXT_REGION 121 933 128 933 51
STRAND 132 933 139
COLOUR_TEXT_REGION 132 933 139 933 51
HELIX 9 933 21
COLOUR_TEXT_REGION 9 933 21 933 50
HELIX 30 933 42
COLOUR_TEXT_REGION 30 933 42 933 50
HELIX 48 933 48
COLOUR_TEXT_REGION 48 933 48 933 50
HELIX 60 933 66
COLOUR_TEXT_REGION 60 933 66 933 50
HELIX 71 933 76
COLOUR_TEXT_REGION 71 933 76 933 50
HELIX 82 933 96
COLOUR_TEXT_REGION 82 933 96 933 50
HELIX 145 933 165
COLOUR_TEXT_REGION 145 933 165 933 50
STRAND 26 934 30
COLOUR_TEXT_REGION 26 934 30 934 51
STRAND 50 934 57
COLOUR_TEXT_REGION 50 934 57 934 51
STRAND 121 934 128
COLOUR_TEXT_REGION 121 934 128 934 51
STRAND 132 934 140
COLOUR_TEXT_REGION 132 934 140 934 51
HELIX 9 934 21
COLOUR_TEXT_REGION 9 934 21 934 50
HELIX 31 934 43
COLOUR_TEXT_REGION 31 934 43 934 50
HELIX 62 934 68
COLOUR_TEXT_REGION 62 934 68 934 50
HELIX 71 934 75
COLOUR_TEXT_REGION 71 934 75 934 50
HELIX 82 934 97
COLOUR_TEXT_REGION 82 934 97 934 50
HELIX 100 934 104
COLOUR_TEXT_REGION 100 934 104 934 50
HELIX 145 934 165
COLOUR_TEXT_REGION 145 934 165 934 50