SILENT_MODE
BLOCK_FILE jp_WwWt2zt.concise.blc
MAX_NSEQ 977
MAX_INPUT_LEN 979
OUTPUT_FILE jp_WwWt2zt.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 92 966   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 967 92 976 H SPACE
SUB_CHARS 1 967 92 976 E SPACE
SUB_CHARS 1 967 92 976 - SPACE
STRAND 15 970 22
COLOUR_TEXT_REGION 15 970 22 970 51
STRAND 29 970 29
COLOUR_TEXT_REGION 29 970 29 970 51
STRAND 44 970 51
COLOUR_TEXT_REGION 44 970 51 970 51
STRAND 54 970 57
COLOUR_TEXT_REGION 54 970 57 970 51
STRAND 63 970 66
COLOUR_TEXT_REGION 63 970 66 970 51
STRAND 70 970 75
COLOUR_TEXT_REGION 70 970 75 970 51
HELIX 4 970 9
COLOUR_TEXT_REGION 4 970 9 970 50
HELIX 77 970 87
COLOUR_TEXT_REGION 77 970 87 970 50
STRAND 4 975 8
COLOUR_TEXT_REGION 4 975 8 975 51
STRAND 15 975 22
COLOUR_TEXT_REGION 15 975 22 975 51
STRAND 44 975 51
COLOUR_TEXT_REGION 44 975 51 975 51
STRAND 54 975 56
COLOUR_TEXT_REGION 54 975 56 975 51
STRAND 63 975 66
COLOUR_TEXT_REGION 63 975 66 975 51
STRAND 70 975 75
COLOUR_TEXT_REGION 70 975 75 975 51
HELIX 77 975 87
COLOUR_TEXT_REGION 77 975 87 975 50
STRAND 15 976 22
COLOUR_TEXT_REGION 15 976 22 976 51
STRAND 28 976 32
COLOUR_TEXT_REGION 28 976 32 976 51
STRAND 45 976 50
COLOUR_TEXT_REGION 45 976 50 976 51
STRAND 55 976 57
COLOUR_TEXT_REGION 55 976 57 976 51
STRAND 63 976 65
COLOUR_TEXT_REGION 63 976 65 976 51
STRAND 70 976 74
COLOUR_TEXT_REGION 70 976 74 976 51
HELIX 4 976 12
COLOUR_TEXT_REGION 4 976 12 976 50
HELIX 77 976 88
COLOUR_TEXT_REGION 77 976 88 976 50