QUERY           : SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCE : QUERY 
UniRef90_C6GH82 : SKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCNDPEVVLEKLLALIAFFLSKHNTCDLSDLID : UniRef90_C6GH82
UniRef90_A8JNZ0 : SKLTDLKCANVVLLGCLTNMNIAANSREWSYCVNLHNEINLTSDPEEALEKLLALVAFFLSKQQNFGVDDLID : UniRef90_A8JNZ0
UniRef90_B1PHJ4 : SKLTDIKCTNVVLMGCLSSMNIEANSKKWSYCVDLHNKINLCDDAEKAMEYLLALVTFFISEHADFNVSELVD : UniRef90_B1PHJ4
UniRef90_P0C6W4 : SKLTDLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNFVCLFATLMSFSANVDLEAL-- : UniRef90_P0C6W4
UniRef90_I1U343 : SKLSDVKCTTVVLMQLLTKLNVEANSKMHAYLVELHNKILASDDVNECMGNLLGMLVTLFCVDSTIDLSEYCD : UniRef90_I1U343
UniRef90_K4JZB7 : SKLTDIKCTNVVLLGCLSSMNIAANTKEWSYCVDLHNKINLCNDPEAAQEMLLALLAFFLSKHKDFGFDDLLD : UniRef90_K4JZB7
UniRef90_H9AA60 : SKLTDVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLSTAFEKLAQLLIVLFANPAAVDIEEVCD : UniRef90_H9AA60
UniRef90_B2BW32 : SKLTDVKCATVVLMQLLTKLNVEANSRLHKHLVQTHNDILAESDPAICIEKLTGMLMTLLSIDSTLDVKALCD : UniRef90_B2BW32
UniRef90_U3PTI2 : SKLTDLKCTNVVLMGILSNMNIASNSKEWAYCVEMHNKINLCDDPETAQELLLALLAFFLSKHSDFGLGDLVD : UniRef90_U3PTI2
UniRef90_A3EXH3 : SNMTDLKCTSVVLLSVLQQLRVEASSKLWSLCVKLHNEILASSSPSEAFEAFVSLLSVLLSLPGAINLDELCN : UniRef90_A3EXH3
UniRef90_H9BR16 : -KTLDIKATAVIIAQLLEKVGVTNKTEMCKKITQLHNKVLASKTAEEAEPHLYALLVYLLPHFSSDNLDKYFD : UniRef90_H9BR16
UniRef90_H9BR34 : -RVLDAKATAVIVANLLEKAGVTNKHVVCKKIVKLHNDTLKAATYEEAETALVKLLAHIIEFLPSEQVDEYL- : UniRef90_H9BR34
UniRef90_H9BQZ1 : -KVLDAKATAVVVANLLDKAGVTNTHSVCKKIVKLHNDTLKATTFEEAETSLVKLLV---------------- : UniRef90_H9BQZ1
UniRef90_H9BR24 : -RTLDAKATAVLVANMLDKVGALNKHEVSKKIVAHHNATLKAESYEEAETNLVQLMAYLIPEQIDTFLDSLLD : UniRef90_H9BR24

                : 1---------11--------21--------31--------41--------51--------61--------71- :
OrigSeq         : SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCE : OrigSeq

Jnet            : ----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---------H---- : Jnet
jhmm            : ----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH--------HHH--- : jhmm
jpssm           : ----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------- : jpssm

Lupas 14        : ------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -----B-BB-BBBB-BB--B-B-B-B-BB--BB-BBB-BBBB--B--BB-BBBBBBBBBBBB---B-B--BB- : Jnet_25
Jnet_5          : -------BB-BBBB-BB--B-----------B------B--------B---BB-BBBBBB-------B----- : Jnet_5
Jnet_0          : ----------BBB---B------------------------------B------BBB-B-------------- : Jnet_0
Jnet Rel        : 9942235489999999986142012899999999999861688568999999999998604777765100479 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.