Jpred secondary structure prediction results

QUERY           : LKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN : QUERY 
UniRef90_P0C6X5 : LKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEARSVNRKSKVISAMHSLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDLESYSKIVCDGSVHYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCERV- : UniRef90_P0C6X5
UniRef90_P0C6W0 : LRHAMNVAKSEFDREASTQRKLDRMAEQAASQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVPLSIIPAVSATKLNIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSNVESLAWPLFLNCER-- : UniRef90_P0C6W0
UniRef90_D9J1Z2 : LQKAMNIAKAEFDREASVQKKLDRMAEQAASNMFKEARAVDRKSKIIGAMHSLLFSMLKRLDMSSVNTLIDQARNGCLPLSIIPAASATRLVVVTPNIDVFSKVRLENNVHYAGAVWSIIEVRDSNSSIVHLKEVTQANEQNLCWPLTVTCERVS : UniRef90_D9J1Z2
UniRef90_P0C6W4 : LQKAVNIAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGVISNARNGCVPLSVVPLCASNKLRVVIPDITIWNKVVTWPSLSYAGALWDISLINNVDGEVVKSSDVT-ETNESLTWPLVLECTRA- : UniRef90_P0C6W4
UniRef90_B1PHK0 : LKRAMNIAKAEFDHEAAVQRKIQRMAEQAASQMYKEARAVNRKSKVISSMHALLFGMLRKLDMSAIDTILNLARGGVVPLNIIPAACATKLVVVASDHESFTRVYQQGAVHYAGAVWTLSEVKDNDGKPVHVKEITKDNTA-LTWPLVLNCERV- : UniRef90_B1PHK0
UniRef90_K4JZB7 : LKTAMNMAKSEFDREVSVQKKISRMAEQAAAQMYKEARAVNRKSKVIGAMHSLLMGMLRKLDMSNVDTILNLAKDGVVPLSIIPAACSTKLNVVSADLDSYYKICRDGCVHYAGVIWNVIDIRDNDGKIVHAKEIAPENVENIAWPIFLNCER-- : UniRef90_K4JZB7
UniRef90_S5YAF0 : LKHAMNRAKGEFDHEAATQRKIDRMAEQAAAQMFKEARAVNKKSKVTSAMHAMLFSMLRRLDMSSVDIILNLARNGTVPLSIIPALCATRLSIIVSDFESYAKLFREGCIHYAGTIWSVADIKNNDGKPVHQKEVTSSNAENLSWPLCINAER-- : UniRef90_S5YAF0
UniRef90_P0C6X2 : LEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLSAIPALAANTLTIVIPDKQVFDKVVDNVYVTYAGSVWHIQTVQDADGINKQLTDISVDSN----WPLVIIANRYN : UniRef90_P0C6X2
UniRef90_A3EXH3 : LKKAMNVAKSVLDKDIATTRKLERMSELAMTAMYKQARAEDRRSKVTAAMQTMLFNMIRRLDSDALSNILNNARNGVVPLGVIPRTAANKLLLVVPDYSVFTATITMPTLTYAGSAWDVMQVADADGKTVNATDITRENSANLAWPLVVTAQR-- : UniRef90_A3EXH3
UniRef90_A8JNZ1 : LKKAMNTAKGEFDHEASVQKKIQRMADAAAAQMYKDARAVDRKSKVVSAMHSLLFGMLRKLDMSSINQLMELAKDGCIPMAIIPAAAATKLTVITPDLESFSKIRVDNNIYYAGAAWSITDVQDADGRVTILKEINADNKDALVWPLHVTCERV- : UniRef90_A8JNZ1
UniRef90_B2BW31 : -KKAMNIAKSVLDRDIAVQKKLDAMAERAMSTMYKEAKSSEKKTRLVSSLHALLFSMIKRLDSDQVADVFEKARNGVVPLASVPITCSNKLTIVIPDMSLWEKVVVHDYVVYGNIVWDINEVVDMDGNQILPCRVSGEA----SWPLEVRLVR-- : UniRef90_B2BW31
UniRef90_H9BR34 : --KAVNIAKSEWERDAASQKKLEKLADAAMKSMYLAERAEDRRIKLTSGLTAMLYHMLRRIDSDKVKALFECAKQSILPIHAVVGVSSDALKVIFNDKESYMQYITGNILIYKGVSYNILKVTSLDNSPIE--------GIPEEYPVVVETIKV- : UniRef90_H9BR34
UniRef90_H9BR24 : --KIANIAKSEWDRDAAANRKLEKLADQAMKAMYLAERSEDRRIKLTSGLTSMLYHMLRRVNSDRIAALFECAKSHVVPIHAIAGSSTEGLKLIIDNQETYNKYVINNGVVYRGTCYNIVKVVDLDNANVTL--------PPTTYPVVVECTAA- : UniRef90_H9BR24
UniRef90_T2B9L7 : ----------------------------AMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDV-VDSNENLTWPLVLECTRAS : UniRef90_T2B9L7
UniRef90_H9BR16 : --KAVNIAKAEYDRDVAAEKKLAKLADSALKSMYLAERSEDRKAKLTSGLTAMLYHMLRRVDSDKVKALFELAKSDVIPLHAITGSSTDGLKVIIGDQQTYEQYVTGNQVIFRGRTYVINTMYDLDNQILQEK--------PQSFPIVLECTKLN : UniRef90_H9BR16
UniRef90_C6K456 : -RKAANIAKSIFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGIVPLATVPIVCSNKLTLVVPDPQTWVKCVEGMHVTYSTVVWNIDNVIDADGTELHPTSTGSG----------------- : UniRef90_C6K456
UniRef90_F1BYL7 : LKKAVNCAKAAFEKDAAVARKLERMADLAMTQMYKEARAEDKRARVTSAMQAMLFSMLRRLDNDALNNIINNARDGCVPLNVIPMYASSKLLVVIPDIAVYNKTCESSMLSYAGA---------------------------------------- : UniRef90_F1BYL7
UniRef90_U3PTI2 : LKKAMNVAKAEFDRESSVQKKINRMAEQAAAAMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNMARNGVVPLSVIPATSAARLV--------------------------------------------------------------- : UniRef90_U3PTI2

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-- :
OrigSeq         : LKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN : OrigSeq

Jnet            : -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------EEEHHH----EEEEE-----EEEEEE--EEEEEEEEEEEEEEE------EEEE-----------EEEEEEEEE-- : Jnet
jhmm            : -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHHHHH---EEEEE---EEEEEEEE--EEEEEEEEEEEEEHHH------EEEE-----------EEEEEEEE-- : jhmm
jpssm           : -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----EEEEEEE----EEEEE-----EEEEEE--EEEEEEEEEEEEEEE-----EEEE-----------EEEEEEEEEE-- : jpssm

Lupas 14        : ----------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : B--BB-BB-BBB----BB---B--BB--BB--BB--B-B------BBBBBB-BBBBBB--B----B--BB--B--BBBBBBBBBBBBB--BBBBB-B--BB--BB-B-BBBBBBBBB-B--B--B----B----B---B---BBBBBBB-B---- : Jnet_25
Jnet_5          : ---B---B---------------------B---------------B---B--BB--BB-------B--BB--B---BBBB-BBB--B---B-BBB----BB--BB----B-B-BB---B--B----------------------BBB-B-B---- : Jnet_5
Jnet_0          : ------------------------------------------------------------------------B--------------------B---------------B-----------B------------------------B-------- : Jnet_0
Jnet Rel        : 74899986899999999999999999999999999986201309999999999999987416589999999861588302020121168548885378301578754458898578888994317884125302776777773125789998479 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.