SILENT_MODE
BLOCK_FILE jp_K6SIjhE.concise.blc
MAX_NSEQ 165
MAX_INPUT_LEN 167
OUTPUT_FILE jp_K6SIjhE.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 98 154   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 155 98 164 H SPACE
SUB_CHARS 1 155 98 164 E SPACE
SUB_CHARS 1 155 98 164 - SPACE
STRAND 71 158 74
COLOUR_TEXT_REGION 71 158 74 158 51
STRAND 81 158 83
COLOUR_TEXT_REGION 81 158 83 158 51
HELIX 8 158 16
COLOUR_TEXT_REGION 8 158 16 158 50
HELIX 44 158 51
COLOUR_TEXT_REGION 44 158 51 158 50
HELIX 54 158 65
COLOUR_TEXT_REGION 54 158 65 158 50
HELIX 84 158 91
COLOUR_TEXT_REGION 84 158 91 158 50
STRAND 71 163 74
COLOUR_TEXT_REGION 71 163 74 163 51
HELIX 11 163 16
COLOUR_TEXT_REGION 11 163 16 163 50
HELIX 24 163 29
COLOUR_TEXT_REGION 24 163 29 163 50
HELIX 44 163 51
COLOUR_TEXT_REGION 44 163 51 163 50
HELIX 54 163 65
COLOUR_TEXT_REGION 54 163 65 163 50
HELIX 81 163 92
COLOUR_TEXT_REGION 81 163 92 163 50
STRAND 72 164 74
COLOUR_TEXT_REGION 72 164 74 164 51
STRAND 80 164 83
COLOUR_TEXT_REGION 80 164 83 164 51
HELIX 7 164 17
COLOUR_TEXT_REGION 7 164 17 164 50
HELIX 44 164 51
COLOUR_TEXT_REGION 44 164 51 164 50
HELIX 54 164 65
COLOUR_TEXT_REGION 54 164 65 164 50
HELIX 84 164 87
COLOUR_TEXT_REGION 84 164 87 164 50